FastQCFastQC Report
Thu 21 Sept 2023
SRR18590153_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590153_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63758889
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGCGGGCATGCCTGTTCGAGCGTCATT16053612.5178622544693336No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT14669072.300709788089313No Hit
TGGCGGGCATGCCTGTTCGAGCGTCATT12605151.9770027674102038No Hit
AAATACCCTTCGGTGGGCTGAGG9794711.5362108960211023No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT9564931.5001719995466043No Hit
TACGATCTGCTGAGGGTAAGCCCTTC8862361.389980305334367No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA8638181.3548197177651573No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG7302211.1452850127297545No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC6529771.0241348465152835No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT5989100.9393356901184399No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT5949710.9331577280149909No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG5789440.9080208408273863No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC5507040.8637289774606958No Hit
AATACCCTTCGGTGGGCTGAGG4008860.6287531139383561No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC3573210.5604253863331904No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA3185760.4996573889485433No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG3157510.49522663420311475No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2577540.4042636313816572No Hit
TACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC2437340.38227454057425625No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA2330870.3655756925124589No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG2145020.3364268157181973No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG2121970.33281163352767956No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT2107910.3306064508119017No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA2052220.3218719824305596No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1945660.3051590186899273No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1884910.2956309354763067No Hit
CAATACCCTTCGGTGGGCTGAGG1847840.28981684420504883No Hit
AGTGAGGCTTTCGGACTGGCC1795860.2816642554734603No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT1761290.2762422663920634No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1686050.2644415588860088No Hit
TTACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC1670780.26204659871033825No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT1595600.25025530165684035No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAAC1532790.24040412623877436No Hit
ACGATCTGCTGAGGGTAAGCCCTTC1487320.2332725716095837No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT1476980.23165083695231892No Hit
ATGCCTGTTCGAGCGTCATT1475210.23137322860189738No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1431360.22449575619173665No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT1416430.22215412191388717No Hit
GTGAGGCTTTCGGACTGGCC1351990.21204729586803184No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1345380.21101057767803955No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAAC1324600.20775142427591548No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCC1315650.20634769843621334No Hit
ACCAGCGGAGGGATCATTA1313470.20600578532665462No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1301200.20408134777881717No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAGG1271370.19940278444939655No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1216400.1907812414987344No Hit
TTAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1197650.1878404750747774No Hit
AAATACCCTTCGGTGGGCTGAGGT1196030.18758639285574752No Hit
GCGGGCATGCCTGTTCGAGCGTCATT1186260.186054057497771No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1168390.1832513110446451No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG1123940.17627973410891773No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGT1080200.1694195141951109No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTC1057480.16585608949365474No Hit
ATACCCTTCGGTGGGCTGAGG1051090.16485387629637022No Hit
AAATACCCTTCGGTGGGCTGAG1029500.16146768178473123No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT1029310.16143788201830178No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG1013560.15896763822217794No Hit
TTTCTTCTAAAGCTAAATACCG1013450.15895038572582404No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC973310.15265479296541695No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAG967790.15178903133020402No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT967100.1516808111258024No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAG956070.14995085626413598No Hit
CCAGCGGAGGGATCATTA954630.14972500540277606No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGA932280.14621961182541937No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCAT899120.14101876837910396No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA897870.1408227172841735No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCA897010.14068783413086133No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA890060.13959779004304795No Hit
CGGGCATGCCTGTTCGAGCGTCATT887490.13919470899187092No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAA886730.1390755099261532No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCTA882780.13845598846617294No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT862090.13521095074288386No Hit
TGAGGGTAAGCCCTTC858180.13459770291794138No Hit
TGGCGGGCATGCCTGTTCGAGCGTCA855150.1341224750638299No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA847230.1328802953263505No Hit
TTTACCCAATCCCGACACGGGGAGGTAG846760.13280658011465665No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGC826440.129619573515467No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCC818400.12835857287287422No Hit
TCCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG787760.12355296843393868No Hit
ATAACTTCTCGAATCGCAT785980.1232737916747577No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAG784810.12309028784990278No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC784550.12304950922215725No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAA784010.12296481514914728No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA779360.12223550507600595No Hit
TACGATCTGCTGAGGGTAAGCCCTT775210.1215846154408368No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGG757860.11886342624320195No Hit
TTCGAGCGTCATT755140.11843681906063325No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA750020.11763379377579807No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAAGG748710.11742833222831094No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGC747590.11725267044725325No Hit
TCTTCTAAAGCTAAATACCG746770.11712406092897885No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGC743470.11660648603836242No Hit
ACTGGTGATTCATAATAACTTCTCGAAT741180.11624732043244981No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA740690.11617046840323708No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCA732260.11484829981902601No Hit
ACTGGTGATTCATA720440.11299444066536354No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC711970.1116659984461147No Hit
AGGGCCCGAGTTGTAATTTG692570.10862328545279387No Hit
ACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC680350.10670668994875365No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTT675410.10593189602158845No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCAT666990.10461129584613685No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTT661670.10377690238611277No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCG660170.10354164107219622No Hit
TTTCTTCTAAAGCTAAATACCGG648330.10168464510101485No Hit
TCGGGCATGCCTGTTCGAGCGTCATT644910.10114824930528511No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGT641140.10055695920297482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)