FastQCFastQC Report
Thu 21 Sept 2023
SRR18590155_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590155_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52134469
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGGGCATGCCTGTTCGAGCGTCATT17353023.328511891048511No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT10257541.9675159633830739No Hit
AAATACCCTTCGGTGGGCTGAGG9744181.8690475201732657No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA7647231.4668280212080034No Hit
AATACCCTTCGGTGGGCTGAGG7077061.3574627565497983No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCATT6440111.235288308009812No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC5373181.0306386740027984No Hit
TACGATCTGCTGAGGGTAAGCCCTTC4272740.8195614306534895No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC3891870.7465061167113834No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT3161110.6063378146231815No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC3096790.5940004874701994No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT3054000.5857928657525984No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC2444360.46885679414899195No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2421340.46444128931283446No Hit
AGTGAGGCTTTCGGACTGGCC2224410.42666781549074567No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT2152430.4128612108814228No Hit
GCGGGCATGCCTGTTCGAGCGTCATT2131210.4087909670663376No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA2078050.3985942582440036No Hit
GTGAGGCTTTCGGACTGGCC2056270.3944165998890293No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT2013090.3861341716168626No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT2008170.38519045815926506No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1906790.36574459020576194No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1894760.36343709571492905No Hit
ATACCCTTCGGTGGGCTGAGG1866880.3580893861218765No Hit
AGGGCCCGAGTTGTAATTTG1810930.3473575227168805No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1807820.346760988397139No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1798620.34499632095610294No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT1774760.3404196943101118No Hit
ATGCCTGTTCGAGCGTCATT1705040.327046584093913No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT1612320.3092618052751242No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG1582290.30350170057356873No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA1493370.2864458061325991No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1486200.2850705163986613No Hit
TCTTCTAAAGCTAAATACCG1485200.28487870472028787No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT1477980.2834938244024313No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1433120.27488915251059715No Hit
CCAGCGGAGGGATCATTA1432360.2747433756350333No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1398020.2681565625996881No Hit
AGGGCCCGAGTTGTAATTT1369510.2626880116492603No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA1357050.26029803813672675No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGG1349200.258792316461495No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA1267660.2431519922069217No Hit
TTTCTTCTAAAGCTAAATACCG1220260.2340601186520189No Hit
ACCAGCGGAGGGATCATTA1216540.23334657920846955No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT1194860.22918810202133258No Hit
GGCCAGCATCAGCTCGCTGTCGGGGAC1170690.22455201375504563No Hit
CGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA1169910.22440240064591435No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1138820.2184389755652829No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA1128250.21641152612487524No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC1122750.21535656189382116No Hit
CGGGCATGCCTGTTCGAGCGTCATT1111170.21313538265825627No Hit
AGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG1079630.20708564232235685No Hit
TCTTCTAAAGCTAAATACCGG1048600.20113372594242782No Hit
GGGCCCGAGTTGTAATT1029540.19747779535262935No Hit
TCTTCTAAAGCTAAATACC1014450.1945833571259736No Hit
GTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA995770.19100031497395706No Hit
GGCGCATCATCGACCGATCCTG994610.19077781342704384No Hit
TTTCTTCTAAAGCTAAATACCGG979160.18781432299617362No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC971110.18627023898526712No Hit
GGGGCCCGAGTTGTAATTT970190.18609377224116352No Hit
GGGGCCCGAGTTGTAATT961280.18438473018685583No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT929050.17820263979287868No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG890890.17088310614614682No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC890870.17087926991257932No Hit
GGGCCCGAGTTGTAATTT883560.16947712654366923No Hit
ACGATCTGCTGAGGGTAAGCCCTTC864240.16577132491749363No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCTT849240.16289414974189148No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGT848460.16274453663276017No Hit
TGGCGGGCATGCCTGTTCGAGC836670.1604830769447369No Hit
TGGCGGGCATGCCTGTTCGAGCGTCA833880.1599479223620749No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA824360.1581218751839594No Hit
CAATACCCTTCGGTGGGCTGAGG822550.1577746960461034No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCT799590.15337069991064836No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT797830.15303311135671105No Hit
TTTCTTCTAAAGCTAAATACCGGCCAGAGACCGA788390.1512224091128654No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGAT783980.15037651961123838No Hit
AGGGCCCGAGTTGTAATTTGC781020.14980875704325292No Hit
CCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA779410.1494999402410716No Hit
GTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA768600.1474264559978543No Hit
ATAACTTCTCGAATCGCAT765840.14689705576554352No Hit
AAATACCCTTCGGTGGGCTGAG762650.14628517651153214No Hit
GGCCGGAAAGTTATCCAAACT754840.1447871273034353No Hit
CGGCGCATCATCGACCGATCCTG751800.14420401980117992No Hit
GGCCAGCATCAGCTCGCTGTCGGGG727230.13949120686354358No Hit
TACGATCTGCTGAGGGTAAGCCCTTCTTCGCCTCGATTTC719510.13801042070650035No Hit
TTTCTTCTAAAGCTAAATACCGGCCA718400.1377975097435058No Hit
AGGGCCCGAGTTGTAATT716970.1375232190434317No Hit
ATCTTTGAACGCACATTGCGCCCGC711200.13641646565921675No Hit
TCGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA700620.13438709810202537No Hit
GGCCAGCATCAGCTCGCTGTCGGGGA694140.13314415842616523No Hit
GTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC683770.13115507132143228No Hit
TCGGGCATGCCTGTTCGAGCGTCATT661830.1269467230979182No Hit
TTTCTTCTAAAGCTAAATACCGGCCAG660870.12676258388667966No Hit
TGAATGGCTCAGTGAGGCTTTCGGACTGGCC647200.12414051824331422No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA646630.12403118558664133No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTT641150.1229800575891547No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC622110.11932796323292369No Hit
TTTCTTCTAAAGCTAAATACC617860.11851276359983642No Hit
GGGGCCCGAGTTGTAATTTG609540.11691689043576908No Hit
TTACCCAATCCCGACACGGGGAGGTAG583460.11191444186378881No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGAA583270.11187799764489784No Hit
ATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA576930.11066191160401001No Hit
TGAGGGTAAGCCCTTCTTCGCCTCGATTTC573240.10995412651081188No Hit
TTTCTTCTAAAGCTAAATACCGGCC570810.10948802413236433No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACT563650.10811465251521024No Hit
TTCGAGCGTCATT562560.10790557778578315No Hit
TAGGTGGGAGCTTCGGCGCCGGTGAAATACCACTA558850.10719395645901754No Hit
TCGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA554460.10635190319095797No Hit
AACGCACATTGCGCCCGC553620.10619078138112426No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCAT538600.10330976997195464No Hit
ATCATCGAATCTTTGAACGCACATTGCGCCCGC537020.10300670752012453No Hit
AATACCCTTCGGTGGGCTGAG531750.10199585997509632No Hit
TTTCTTCTAAAGCTAAATACCGGC530530.10176184972748067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)