FastQCFastQC Report
Thu 21 Sept 2023
SRR18590156_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18590156_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51665777
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGGGCATGCCTGTTCGAGCGTCATT15255792.9527843934293294No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCAT9292501.798579357472936No Hit
AAATACCCTTCGGTGGGCTGAGG8996771.7413403073372924No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCAT6809441.3179788237772947No Hit
AATACCCTTCGGTGGGCTGAGG5182591.0030992082050754No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGAC4596860.8897301592890009No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC4066620.7871012953119819No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGACA3761990.7281396348689384No Hit
TCTGGCGGGCATGCCTGTTCGAGCGTCATT3263220.6316018435181958No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGAT3019400.5844100631642489No Hit
GCGGGCATGCCTGTTCGAGCGTCATT2862130.5539701841704616No Hit
TACGATCTGCTGAGGGTAAGCCCTTC2763750.5349285659635004No Hit
ATACCCTTCGGTGGGCTGAGG2677150.5181669870173442No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGC2672310.5172301966928707No Hit
GGCGGGCATGCCTGTTCGAGCGTCATT2636040.5102100758109183No Hit
GTTACGATCTGCTGAGGGTAAGCCCTTC2549350.4934310772099682No Hit
AGTGAGGCTTTCGGACTGGCC2486740.48131280402499316No Hit
CGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA2224900.43063322167786233No Hit
TTACGATCTGCTGAGGGTAAGCCCTTC2167270.4194788360581512No Hit
GTGAGGCTTTCGGACTGGCC2128440.41196322277317154No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGATT1980070.3832459540867836No Hit
ATGCCTGTTCGAGCGTCATT1966280.38057687586891414No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCGC1884030.36465724690446444No Hit
ATCCCGACTTCGGAAGGGATGTATTTATTAGA1845220.3571455046538834No Hit
TTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1778070.3441485066604147No Hit
TACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT1745010.3377496867994456No Hit
TGGCGGGCATGCCTGTTCGAGCGTCAT1740630.3369019302661412No Hit
ACCAGCGGAGGGATCATTA1731690.33517157788994445No Hit
CCAGCGGAGGGATCATTA1730600.334960606515218No Hit
CTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA1702470.3295159966335162No Hit
AAATGGCTCAGTGAGGCTTTCGGACTGGCC1686040.3263359418750249No Hit
AGGGCCCGAGTTGTAATTTG1594490.3086162819152028No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGTA1528970.2959347732252241No Hit
GTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1475010.2854907224176654No Hit
TCTTCTAAAGCTAAATACCG1472020.2849120027750671No Hit
AGGCCAGCATCAGCTCGCTGTCGGGGA1468430.28421715210050935No Hit
AATATTCCGGCACCTGGA1446040.2798835290912203No Hit
AGGGCCCGAGTTGTAATTT1363750.2639561580579733No Hit
GGGGCCCGAGTTGTAATT1355150.2622916132665536No Hit
GGCGCATCATCGACCGATCCTG1329870.2573986257866595No Hit
GGGCCCGAGTTGTAATT1283710.24846427839457444No Hit
TCTTCTAAAGCTAAATACCGG1248460.2416415802669531No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC1208330.2338743497460611No Hit
GGCCAGCATCAGCTCGCTGTCGGGGAC1202930.23282917045842552No Hit
CGGGCATGCCTGTTCGAGCGTCATT1181080.22860006537789995No Hit
ATTACCCAATCCCGACACGGGGAGGTAGT1180970.2285787746887074No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCA1179340.22826328538521737No Hit
GTGAATCATCGAATCTTTGAACGCACATTGCGCCCG1159080.22434192753938453No Hit
GGGGCCCGAGTTGTAATTT1126870.21810762664035807No Hit
ACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT1116800.2161585608206376No Hit
GGCCAGCATCAGCTCGCTGTCGGGGACA1112650.21535532118291764No Hit
ATCGAATCTTTGAACGCACATTGCGCCCGC1087280.21044491404822963No Hit
TCGTATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA1062180.2055867658779234No Hit
CTGGTGATTCATAATAACTTCTCGAATCGCA1045130.20228670905307394No Hit
TCTTCTAAAGCTAAATACC1023380.19807695914454163No Hit
CGGTGCGCTCTCGACGTCCCTTGAAAATCCGCGGGA1018380.19710920054487904No Hit
TTTCTTCTAAAGCTAAATACCG985480.1907413489590992No Hit
CGGCGCATCATCGACCGATCCTG950810.18403091082903875No Hit
TTTCTTCTAAAGCTAAATACCGG945680.1830379905057849No Hit
TTCTGGCGGGCATGCCTGTTCGAGCGTCATT926100.17924824782950619No Hit
GGGCCCGAGTTGTAATTT924380.17891533887122224No Hit
AAATACCCTTCGGTGGGCTGAG923600.1787643685296749No Hit
CTGGCGGGCATGCCTGTTCGAGCGTCATT883480.1709990735259822No Hit
ATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGCGT877890.16991711941155943No Hit
ATCTTTGAACGCACATTGCGCCCGC849960.16451121987384415No Hit
TCGGGCATGCCTGTTCGAGCGTCATT848970.16431960367111095No Hit
TGGCGGGCATGCCTGTTCGAGCGTCA846110.16376604575210396No Hit
TGAATCATCGAATCTTTGAACGCACATTGCGCCCG818430.1584085341443718No Hit
AACTTCTCGAATCGCAT814250.15759948795505388No Hit
AGGCCAGCATCAGCTCGCTGTCGGGG811760.1571175441724219No Hit
TTGGCGGGCATGCCTGTTCGAGCGTCATT811180.15700528417486104No Hit
AGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC780780.15112131188891245No Hit
GGGGCCCGAGTTGTAAT775190.15003935777448968No Hit
AGGGCCCGAGTTGTAATT766680.14839223263786394No Hit
TTTACCCAATCCCGACACGGGGAGGTAG766400.14833803815628283No Hit
TGGCGGGCATGCCTGTTCGAGCGTC740800.14338311412601035No Hit
GGCCGGAAAGTTATCCAAACT739520.14313536792449671No Hit
AGGGCCCGAGTTGTAATTTGC733350.14194115381251307No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGAT725030.1403308035026745No Hit
TTACCCAATCCCGACACGGGGAGGTAG721900.13972498661928573No Hit
GGGCCCGAGTTGTAAT716610.13870109802084268No Hit
TTTCTGGCGGGCATGCCTGTTCGAGCGTCATT710730.13756301390763948No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAA704070.1362739594528889No Hit
AGCTCGCTGTCGGGGAC692320.1339997267436818No Hit
TTTCTTCTAAAGCTAAATACCGGCCA687620.13309003365999894No Hit
TTTAAGCCATGCATGTCTAAGTATAAGCAA676750.13098612646433247No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCTT672100.13008611096664624No Hit
TCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTA667350.1291667402969668No Hit
CCGGAGCTAGGGTTTA662860.12829769307446978No Hit
AGGGCCCGAGTTGTAATTTGCAGAGGATGCT655350.12684411965777656No Hit
GTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC654990.12677444103860086No Hit
CTCTAAGTCAGAATCCATGCCAGAACGCGACGATA653140.1264163703567257No Hit
ATAACTTCTCGAATCGCAT641140.12409374971753546No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACT640990.12406471695954559No Hit
ACGATCTGCTGAGGGTAAGCCCTTC639330.1237434211044576No Hit
TGAATGGCTCAGTGAGGCTTTCGGACTGGCC638840.12364858076169066No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTT636900.12327309042502158No Hit
TCGAATCTTTGAACGCACATTGCGCCCGC627710.12149435011884172No Hit
TTTCTTCTAAAGCTAAATACCGGCCAG627250.12140531632767278No Hit
TCTTCTAAAGCTAAATACCGGC606210.11733298814029255No Hit
ATTACCCAATCCCGACACGGGGAGGTAG602810.11667491229252198No Hit
GGGGCCCGAGTTGTAATTTG602040.11652587746817394No Hit
TCTTTGAACGCACATTGCGCCCGC601640.11644845678020095No Hit
CCGGAGCTAGGGTTTAACGGCCGG593960.1149619795711192No Hit
TTTCTTCTAAAGCTAAATACCGGCC588330.1138722833878991No Hit
TCTTCTAAAGCTAAATACCGGCCA584670.1131638840929461No Hit
ATGGCGAAAGGGAAGCCGGTCAATATTCCGGCACCTGGA579110.11208773653012129No Hit
TGTGAGGCTTTCGGACTGGCC572770.1108606186257491No Hit
TTTCTTCTAAAGCTAAATACCGGCCAGAGACCGA570080.11033996449913064No Hit
TTTACGATCTGCTGAGGGTAAGCCCTTC563530.10907220073357263No Hit
ATGTTAGGGATAACAGG557730.10794960075796402No Hit
TTACCCTTCGGTGGGCTGAGG552800.10699539077869669No Hit
ATTACCCAATCCCGACACGGGGAGGTAGTG548910.10624247458815919No Hit
TCTTCTAAAGCTAAATACCGGCC547060.10588440390628404No Hit
TGCGGGCATGCCTGTTCGAGCGTCATT543560.10520697288652023No Hit
TTTCTTCTAAAGCTAAATACCGGC532900.10314371155203957No Hit
TCCAGCGGAGGGATCATTA523380.10130109917828199No Hit
TTTCTTCTAAAGCTAAATACC523000.10122754952470762No Hit
TACCCTTCGGTGGGCTGAGG521990.10103206228757577No Hit
TCTTCTAAAGCTAAATACCGGCCAG521150.10086947884283247No Hit
TTGACCTCGGATCAGGTAGGAATACCCGCTGAAC520610.1007649609140689No Hit
TAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGG518800.10041463230099106No Hit
AAGTCAGAATCCATGCCAGAACGCGACGATA517420.10014753092748416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)