FastQCFastQC Report
Wed 6 Sept 2023
SRR18677083_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18677083_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9453685
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAACAAAAAAAAAAGA872600.9230263119619492No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAACAAAAAAAAAAGAT847320.8962854167448989No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA784950.830311143220871No Hit
GGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAACAAAAAAAAAAGATC544600.5760716588293348No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA536150.5671333453568634No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA483040.5109541940523722No Hit
GGGGGGGGGATGCGTGCATTTATCAAAAAAAAAACAAAAAAAAAAGATCG440850.466326094004613No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA360320.3811423799290964No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA259110.2740835980889992No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATCAAAAAAAAAACAAAAAAAAA248180.26252196894650076No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAACAAAA204340.21614851774731228No Hit
GGGGGGGGGATGCGTGCATTTATCAGATCAAAAAAAAAACAAAAAAAAAA185640.19636787136444678No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA157080.16615742961607036No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA137560.1455093966003733No Hit
GGGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAACAAAAAAAAAAG127110.13445550597465433No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAACAAAAAAAAAAGATC126230.13352465202722535No Hit
GGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAACAAAAAAA125330.1325726423082639No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAACAAAAAAAAAA125190.13242455190753658No Hit
CCCCGACTGCATAATTTGTGGTAGTGGGGAAAAAAAAAACAAAAAAAAAA118120.12494598667080616No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA111670.11812325035158247No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGA111160.11758377817750433No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA106580.11273910649656721No Hit
CCCCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAACAAAAAAAAA104400.11043312739952726No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAACAAAAAAAAA97740.1033882554792126No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)