FastQCFastQC Report
Wed 6 Sept 2023
SRR18677084_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18677084_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14164577
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGTAATGCGTTAAGCTAACCAATACTAATTGCCCGTGAGGCTTGAC260290.1837612235084747No Hit
CCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA260270.18374710377867268No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCG179290.12657631781026712TruSeq Adapter, Index 20 (97% over 40bp)
CCCCAGTAATGCGTTAAGCTAACCAATACTAATTGCCCGTGCGGCTTGAC144920.10231156214548447No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)