FastQCFastQC Report
Wed 6 Sept 2023
SRR18677088_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18677088_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6628113
Total Bases994.2 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA333620.5033408452752691No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA284810.42969997644880226No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA227630.3434310791020008No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA151850.22909989615445603No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA134820.20340630885442054No Hit
CCCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAA130380.1967075697110173No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAA123320.1860559709829932No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA118510.17879900357763967No Hit
CCCCCCGTAGGGGTCACCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG91940.13871217946948097No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA89300.13472914538421418No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT84230.12707990947046316No Hit
CCCCCCCCTCGGCTCCACCAAAAAAAAAACAAAAAAAAAAGATCGGAAGA80510.12146745235031449No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA67290.1015221074233345No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)