FastQCFastQC Report
Wed 6 Sept 2023
SRR18677111_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18677111_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6570861
Total Bases985.6 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA1174341.787193489559435No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA998361.5193747059936284No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA935341.423466422436877No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA819971.2478882143451215No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA798621.2153962775958889No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA389610.5929359942327193No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA368800.5612658675933032No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA294300.44788650985007905No Hit
GGGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA291770.4440361772985306No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA270460.4116051153722472No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA267500.40710037847399294No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA252580.38439406951387345No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA238850.36349878653649803No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA224900.34226869203290106No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA220010.33482674492733905No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA218530.3325743764782119No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA217040.33030678932334745No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTAAAAAAAAAACAAAAAAA200550.30521114356246465No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA193390.29431455025452524No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA192190.29248830556604377No Hit
GGGGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA175180.266601287106819No Hit
CCCCGACGTACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA162390.2471365624687541No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAA157010.2389488987820622No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAACAAAAAA149000.22675871548644844No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA147480.2244454722143719No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA146070.22229963470540617No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAACAA145500.2214321684783775No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA140060.21315319255726153No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA138840.21129651045730538No Hit
GGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC136520.2077657707262412No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAACAAAAAAAA127900.19464724638064934No Hit
CCCCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA125550.19107085053237316No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA124340.18922938713815435No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA118950.1810265047457251No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG117840.17933722840887975No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAAA114470.1742085245753943No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA112680.17148437624840945No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGCAAAAAAAAAACAAAAAAA111120.16911025815338354No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCCAAAAAAAAAACAAAAA106750.16245968374616354No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA106660.16232271539452744No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA105660.16080084482079288No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA104200.15857891378314046No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAA104170.1585332576659284No Hit
GGGTGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAACAA102260.1556264848700954No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC99550.15150221561527477No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA89060.1355377932967993No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA88850.13521820047631505No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAAA84250.1282175958371361No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA83090.12645222597160402No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA82720.12588913385932224No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA82720.12588913385932224No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAAAAAAAAAACAAAAAAAAAAGAT81080.12339326611839757No Hit
GGGGGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAACAAAAAAA78210.11902549757177941No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA77480.11791453205295319No Hit
GGGGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACACGT74550.11345545127191094No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAAAAAAAACAAAAAAAAAAGATC74400.11322717068585075No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAAAA74070.11272495339651836No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAACAAAAAA73980.11258798504488225No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAA72250.10995514895232147No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA71290.1084941532015363No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTCAAAAAAAAAACAAAAAA71010.10806802944089063No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGTAAAAAAAAAACAAAAAAAAA69560.1058613171089755No Hit
GGGGGGCCGATCGTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA68880.10482644511883603No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACATAAAAAAAAAACA68610.1044155400639277No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA65920.10032170822058176No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)