FastQCFastQC Report
Wed 6 Sept 2023
SRR18677112_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18677112_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4990982
Total Bases748.6 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA1430982.8671311577561287No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA1182362.3689927152612453No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA1010692.0250323483434722No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA776421.5556457626976015No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAACAAAAA498590.9989817635086643No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAA341330.6838934702629663No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAA338210.6776421954637384No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAACAAAAAAAA325760.6526972046783579No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCAAAAAAAAAACAAAAAA310980.6230837939307334No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA297350.5957745389584654No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTAAAAAAAAAACAAAAAAA297340.5957545028212885No Hit
CCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG263080.5271106968528438No Hit
GGGGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA247380.4956539614849343No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAACAAAAAA206150.4130449679041119No Hit
CCCCCCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAG200680.40208520086828603No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGAAAAAAAAAACAAAAAAA192770.38623661636126916No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACATAAAAAAAAAACAAA192480.3856555683831358No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA192360.38541513473701167No Hit
CCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA189910.3805062811286436No Hit
CCCCCCGGGGAGGTAGTGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG175480.35159413518221466No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAACAAAAAA175400.35143384608479855No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGCAAAAAAAAAACAAAAAAA171290.3431989937050464No Hit
GGGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCA169270.33915169399528994No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAAA156760.3140864863868473No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAAAA156520.31360561909459905No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAAA154580.30971860848225863No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAAA135530.27154976716004986No Hit
GGGGGGCCGATCGTAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA132390.26525842008646794No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAAA132240.26495787802881277No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAACAAAAA126130.25271579821365814No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAACAAAAAA122060.24456109038261406No Hit
CCCCCCCGAGTGTTACAGCCCTCCGGCCGCAAAAAAAAAACAAAAAAAAA120980.24239718756749676No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAAAAAAAACAAAA116770.2339619738159745No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA114950.2303153968497582No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTAAAAAAAAAACAAA114570.22955402363703173No Hit
GGGGGGACCGGGGTCCGGTGCGGAGAGCCGTAAAAAAAAAACAAAAAAAA110130.22065797873043821No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAACAAAAA109900.2201971475753669No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCAAAAAAAAAACAAAAAAAAA107380.21514804100675977No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAACAAAAAAA105260.21090037992523314No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAACAAAAAA102530.20543051447590874No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAA99490.19933952877409697No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGTCAAAAAAAAAACAAAAAA99110.1985781555613705No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAAAA96520.19338879603252426No Hit
CCCCGACGTACGCAGTTTTATCCGGTAAAGCAAAAAAAAAACAAAAAAAA94880.1901028695354942No Hit
GGGGGGACCGGGGTCCGGTGCGGAGAGCCGTTAAAAAAAAAACAAAAAAA94490.18932146018559073No Hit
CCCCGGGACCGGGGTCCGGTGCGGAGAGCCGAAAAAAAAAACAAAAAAAA94150.1886402315215723No Hit
CCCCGCGACCTCAGATCAGACGTGGCGACCCGCTAAAAAAAAAACAAAAA91960.18425231747980658No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAAAA90510.1813470775891398No Hit
GGGGGGCCGAGGAAGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC89400.1791230663624914No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAACAAAAA89150.1786221629330661No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAAAAAAAAAACAAAAAAAAAAG86660.17363316477598997No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGAAAAAAAAAACAAA86290.1728918277004405No Hit
CCCCAACTTCTTAGAGGGACAAGTGGCGTTAAAAAAAAAACAAAAAAAAA86050.17241096040819223No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACGAAAAAAAAAACAA84770.16984633484953462No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAAAAAAAAAACAA83650.1676022874857092No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAACAAAAAA81070.16243296409404No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAACAA80240.16076996470834798No Hit
CCCCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAACAAAAAAA77680.1556407135910328No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTTAAAAAAAAAACAAAAAAAA77610.1555004606307937No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAACAAAA73350.1469650661933864No Hit
CCCCGGGGAGGTAGTGACGAAAAATAACAATACAGAAAAAAAAAACAAAA73150.14656434344984615No Hit
CCCCGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC72360.14498148861286217No Hit
CCCCCCCGAGTGTTACAGCCCTCCGGCCGCAGAAAAAAAAAACAAAAAAA69460.13917100883152855No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAACAAAAAAA69200.13865006926492623No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACATAAAAAAAAAACA66970.13418201067445243No Hit
GGGGGCCCGTCTCGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACA66530.1333004206386639No Hit
CCCCCCCTAAGACGAGCCCGAAAAAAAAAACAAAAAAAAAAGATCGGAAG64880.12999445800445683No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA64350.12893254273407517No Hit
CCCCCCCTAAGACGAGCCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGA63930.12809102497264066No Hit
GGGGATCGAGGCCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC62030.12428415890900829No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAA61710.12364300251934389No Hit
CCCCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAGAAAAAAAAAACA61090.12240076201436913No Hit
GGGGGGACCGGGGTCCGGTGCGGAGAGCCGCAAAAAAAAAACAAAAAAAA60780.12177964176188173No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAACAAAAAAAA59620.11945544984934828No Hit
GGGGACGTACGCAGTTTTATCCGGTAAAGCGAAAAAAAAAACAAAAAAAA58070.11634984858691136No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAACAAAAAA58000.11620959562667227No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATCAAAAAAAAAACAAAAA57990.11618955948949526No Hit
GGGGGGCCGATCGAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC57840.11588901743184007No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAGAAAAAAAAAACAAA56620.11344460869624454No Hit
GGGGGCCGATCGCACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCAC55680.11156121180160537No Hit
CCCCCCGGGGAGGTAGTGACGAAAAATAACAAAAAAAAAACAAAAAAAAA55440.11108034450935708No Hit
GGGCGGGGAGGTAGTGACGAAAAATAACAATACAAAAAAAAAACAAAAAA54480.10915687534036388No Hit
GGGGGCCGATCGCAAAAAAAAAACAAAAAAAAAAGATCGGAAGAGCACAC53900.10799477938409716No Hit
CCCCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCCAAAAAAAAAACAAA53770.107734309600796No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA52380.10494928653319126No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAACAAAAAA52020.10422798559481881No Hit
CCCCGGGGAGGTAGTGACGAAAAAAAAAACAAAAAAAAAAGATCGGAAGA50770.10172346844769226No Hit
GGGGTCGCGGCGTGGGAAATGTGGCGTACGGAAAAAAAAAACAAAAAAAA50320.10082184227472671No Hit
GGGCGGGGAGGTAGTGACAAAAAAAAAACAAAAAAAAAAGATCGGAAGAG50090.10036101111965542No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAACAAA49940.10006046906200021No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)