FastQCFastQC Report
Fri 30 Jun 2023
SRR1873526.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1873526.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61797891
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCG763510.12354952372080141No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA716750.11598292245927941No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC656460.1062269260936429No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC644810.10434174849106098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)