FastQCFastQC Report
Sat 1 Jul 2023
SRR1873530.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1873530.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64747849
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1348920.20833433401007653No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1250030.19306123976411943No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1143330.17658192784134033No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG837100.12928614817767922No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC688220.10629233412835075No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC655320.10121108424775624No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTCTCGTCAACTGTCAGAGCAG654640.10110606145387162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)