FastQCFastQC Report
Thu 21 Sept 2023
SRR18747045_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18747045_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8008329
Total Bases222.7 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATT1347541.682673126940714No Hit
TAGCTTATCAGACTGATGTTGAC977301.2203544584644312No Hit
TCAGTGCACTACAGAACTTTGT918751.1472430765519248No Hit
CGAACTCTGCTGCGTACCTACAACAGC775830.9687788800884679No Hit
TCGAACTCTGCTGCGTACCTACAACAGC768290.9593636824860717No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT535180.6682792377785678No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC382160.47720317184771No Hit
AGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTG364040.45457672880322475No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA339120.42345912611732106No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT333990.4170532953878393No Hit
TTGAACTCTGCTGCTTATTTACAACAGC284900.3557546149764826No Hit
TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTG257490.32152774942188317No Hit
CGAACTCTGCTGCGTACCTACAACAGCG253950.3171073516085565No Hit
TGACAGGACTCGAGGAAGAAGCCCCG249080.3110261828653643No Hit
TAGCTTATCAGACTGATGTTGAT247830.30946530793128No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTTGGCT233430.2914840286906295No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT230970.28841222682035167No Hit
TCGAACTCTGCTGCGTACCTACAACAGT215100.268595358657218No Hit
CGAACTCTGCTGCGTACCTACAACAGT214670.268058417679893No Hit
TCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTG207330.2588929600669503No Hit
TAGCTTATCAGACTGATGTTGACT202580.25296163531743016No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC191780.2394756758869422No Hit
TGGACGTCATAATTTGTGGTAGAGGG171060.21360261297956165No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC166340.2077087492284595No Hit
TCAGTGCACTACAGAACTTTGC161250.20135286649686843No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT147870.1846452612024306No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCGGCT141550.17675347753570064No Hit
ATGACAGGACTCGAGGAAGAAGCCCCG117760.14704690579020915No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC117290.1464600168149935No Hit
TAGCTTATCAGACTGATGTTGA116770.14581069284241444No Hit
GCATTGAACTCTGCTGCTTATTTACAGC115110.14373785092995056No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT112960.14105314604332564No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC111050.13866812914404492No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC109120.13625813824581884No Hit
GCGTCTGTAGTCCAACGGTTAGGATA109110.13624565124634613No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTCGGC108930.13602088525583803No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTC105140.13128831245569456No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT104260.13018945650209926No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT103350.12905313955008593No Hit
CATGACAGGACTCGAGGAAGAAGCCCCG100150.12505729971883023No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCA97860.12219777683958788No Hit
TCATGACAGGACTCGAGGAAGAAGCCCCG87050.10869933040962727No Hit
CCGTGTGAAAGTAGGACATCGTCAGGCT84970.10610203451931108No Hit
TGAGATGAAGCACTGTAGCTC82960.10359214762530361No Hit
TAGCTTATCAGACTGATGTTGACA82230.1026805966637984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)