FastQCFastQC Report
Fri 22 Sept 2023
SRR18747046_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18747046_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11009703
Total Bases304.4 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAACTCTGCTGCGTACCTACAACAGC2434572.21129489142441No Hit
TCGAACTCTGCTGCGTACCTACAACAGC1511041.372462090939238No Hit
CGAACTCTGCTGCGTACCTACAACAGCG1444701.3122061512467684No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC1037360.9422234187425401No Hit
TTGAACTCTGCTGCTTATTTACAACAGC649400.5898433409148276No Hit
TTGAACTCTCCTGCTTATTTACAGCAGC550040.49959567483337197No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC456510.41464333779031093No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT377870.34321543460345844No Hit
CTGACTGTGTCGAACTCTGCTGCGTACC371050.33702089874722324No Hit
TCGAACTCTGCTGCGTACCTACAACAGCG335470.30470395068786144No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAGG296380.26919890572888294No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT267040.24254968549106184No Hit
TGCAAATCTAACGAAGTGCTCCTGGACG261000.23706361561251924No Hit
GCATTGAACTCTCCTGCTTATTTACAGC244190.22179526550352904No Hit
GCGTCTGTAGTCCAACGGTTAGGATA237360.21559164675014394No Hit
TCTACACTGAACCCTGCTGCTTATTTGC212610.1931114763041292No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA196880.1788240790873287No Hit
CTCAGTCAACTAGCCATGGTGAACCCGG194950.17707107993739704No Hit
TTTGACTACTGAACCATGCCTGGATCGT172220.15642565471566308No Hit
CTGCATTGAACTCTGCTTCTTATTTGC170910.15523579518902553No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC163910.14887776718409207No Hit
GCATTGAACTCTGCTGCTTATTTACAGC152410.13843243546170136No Hit
CTAGCTGTGGTGAACCCTGTCGCCTACT145460.13211982194251745No Hit
TTGGTCTTTCTGCAAGTGCTGCTACGG144690.13142043886197474No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT144510.13125694671327645No Hit
CGGTGTCTACTACTGAGGAAACTATGT144050.13083913344438083No Hit
GTGAACCCTGCCGCCTACTTGCAACAGC141170.1282232590652082No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC131220.11918577640105277No Hit
GCTGCATTGAACTCTGCTTCTTATTTGC129720.11782334182856703No Hit
TGGACGTCATAATTTGTGGTAGAGGG128880.11706037846797503No Hit
CGAACTCTGCTGCGTACCTACAACAG120790.10971231467370192No Hit
TGACTGTGTCGAACTCTGCTGCGTACC115240.10467130675550468No Hit
ATTGAACTCTCCTGCTTATTTACAGC115220.10465314096120486No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT112230.10193735471338326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)