FastQCFastQC Report
Thu 21 Sept 2023
SRR18747047_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18747047_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8638683
Total Bases240.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATT1685431.9510265627295271No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC1244101.4401500784320942No Hit
TAGCTTATCAGACTGATGTTGAC1168431.3525557078550052No Hit
TCAGTGCACTACAGAACTTTGT1146411.3270657112895565No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCT544340.6301191975674996No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT441360.5109112118131895No Hit
TAGCTTATCAGACTGATGTTGAT406160.4701642599919455No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT350090.4052585330425945No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA323990.37504559433422896No Hit
TAGCTTATCAGACTGATGTTGACT270410.3130222511926876No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC264310.30596098965548335No Hit
TCGAACTCTGCTGCGTACCTACAACAGC249640.2889792344504365No Hit
AGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTG231430.26789963238609404No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC209230.2422012707261049No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT208680.24156459960389798No Hit
TGGACGTCATAATTTGTGGTAGAGGG201110.23280168979461338No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC199180.23056755294759632No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC196000.22688643627738164No Hit
TCAGTGCACTACAGAACTTTGC179440.20771684757966No Hit
GGTGGCTGTAGTTTAGTGGTTAGAATTCC176900.2047765845789225No Hit
TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTG175200.20280869201937377No Hit
CGAACTCTGCTGCGTACCTACAACAGC171210.19818993242372707No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT159800.18498190059757952No Hit
TGAAGTGGCAGGAATGGCGTGAGGCTGGCT159200.18428735028244467No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCA145590.16853263396746934No Hit
TTGAACTCTGCTGCTTATTTACAACAGC143660.16629849712045228No Hit
TAGCTTATCAGACTGATGTTGA140780.16296465560780504No Hit
TCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTG138210.1599896650913108No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT125400.14516101586318192No Hit
CGAACTCTGCTGCGTACCTACAACAGCG117050.13549519064422205No Hit
TGAGATGAAGCACTGTAGCTC114220.1322192283245027No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT110860.12832974655974758No Hit
TCAAACTTGAGAGTTTGATCCTGGCTCAGAACG107510.12445184063357806No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCA106850.12368783528692973No Hit
TGACAGGACTCGAGGAAGAAGCCCCG105580.12221770378656098No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC103690.12002987029388623No Hit
TAGCTTATCAGACTGATGTTGACA100780.11666130126548224No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTC98220.1136978865875736No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT97720.11311909465829455No Hit
TGAGGTAGTAGATTGTATAGTT97630.11301491211102434No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT94950.10991258737008872No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTTGGCT92990.10764372300731488No Hit
TGAGATGAAGCACTGTAGCTCT92820.10744693375136002No Hit
CCGTGTGAAAGTAGGACATCGTCAGGCT91930.10641668411724334No Hit
TTCAAGTAATCCAGGATAGGCT88870.10287447751005566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)