FastQCFastQC Report
Thu 21 Sept 2023
SRR18747048_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR18747048_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14115915
Total Bases390.3 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTCTGTAGTCCAACGGTTAGGATAATTGC1433011.0151732990741302No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATT1174860.8322946121452277No Hit
CGAACTCTGCTGCGTACCTACAACAGC888770.6296226634971945No Hit
TGCAAATCTAACGAAGTGCTCCTGGAC730840.5177418537870199No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT572290.40542182352330686No Hit
TCGAACTCTGCTGCGTACCTACAACAGC569870.4037074465240121No Hit
TTGAACTCTGCTGCTTATTTACAACAGC558430.3956031188909822No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA398870.28256758417715044No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC374320.26517586709752783No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT342300.2424922507680161No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT333480.23624398418380954No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC325030.2302578330912307No Hit
CGAACTCTGCTGCGTACCTACAACAGCG302510.2143042091143224No Hit
GCGTCTGTAGTCCAACGGTTAGGATA284840.20178642333848001No Hit
TGCAAATCTAACGAAGTGCTCCTGGACG280900.1989952475627687No Hit
TCTACACTGAACCCTGCTGCTTATTTGC280720.19886773191819304No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT276230.19568692500627838No Hit
TTGAACTCTCCTGCTTATTTACAGCAGC237530.16827106142251494No Hit
GCATTGAACTCTGCTGCTTATTTACAGC226510.16046427029349497No Hit
ACCTCCTGGGAAGTCCTCGTGTTGCATTCC225880.1600179655374802No Hit
GCATTGAACTCTCCTGCTTATTTACAGC210240.14893827286435204No Hit
TTTGACTACTGAACCATGCCTGGATCGT204830.1451057193246063No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGT202010.14310797422625454No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT187960.1331546697468779No Hit
CGGTGTCTACTACTGAGGAAACTATGT179940.12747313936078533No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC173760.12309510223035489No Hit
CTGCATTGAACTCTGCTTCTTATTTGC172540.12223082952823108No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT154810.10967053853753017No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTG149290.10576005877054374No Hit
TGGACGTCATAATTTGTGGTAGAGGG147900.10477535462632072No Hit
TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTG147840.10473284941146217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)