FastQCFastQC Report
Sat 16 Sept 2023
SRR19165065_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19165065_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157992735
Total Bases7.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA20873991.3211993576793262No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA18657471.180906830937511No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA16067201.0169581531707772No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGA14576490.9226050805437351No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA14289170.9044194342227191No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA13503010.8546601842166983No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA13305110.8421342918077847No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA13094930.8288311484702129No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA12027420.7612641176190791No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA11724130.7420676653265101No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA10357690.6555801442389108No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA8668650.5486739627616422No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA8493670.5375987699687583No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG5226400.330800020646519No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG5129240.3246503707907835No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA4779580.30251897341988543No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA4075110.2579302143228295No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG3673700.23252334988694257No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGAAAAAAAAAAAAAAAG3598780.22778135969353275No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3417490.21630678144789378No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG3059200.19362915642924974No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG3056450.19345509779294598No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA3022120.19128221307137952No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGAT2946440.18649211940030028No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG2886320.18268688114045245No Hit
GGGGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAGATCGGAA2869310.1816102493573518No Hit
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA2497800.15809587700345842No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA2416690.15296209664324123No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2399150.1518519190138711No Hit
GGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA2359660.14935243699654924No Hit
CGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2350030.14874291529923828No Hit
GGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2288190.14482881127413866No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA2193420.13883043419686353No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGAAAAAAAA2180620.13802027036243153No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAGAT2094930.13259660325520664No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAG2050110.1297597639537033No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA2001380.12667544491840083No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCACAAAAAAAAAAAA1901480.12035236936685728No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1862530.1178870661363005No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA1850720.11713956341093786No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA1843180.11666232627721773No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG1826130.11558316273213448No Hit
CGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGAT1807280.11439006989783422No Hit
GCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC1759770.11138296960300105No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA1750650.11080572787096825No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)