FastQCFastQC Report
Sat 23 Sept 2023
SRR19165067_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19165067_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253228986
Total Bases12.6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG9541230.37678269580086693No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG8789380.3470921768805724No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG8477620.3347807900632671No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG8252360.32588528392243377No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG7763850.30659404843962057No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG6698860.2645376465709972No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG6480860.2559288374672874No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC6159410.24323479303431714No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG6097510.2407903651282638No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG5753390.22720108352840776No Hit
CGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA4771840.18843972308920431No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA4609350.18202300111093916No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG4483730.17706227358980145No Hit
GCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC4294370.16958445665457902No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA4267490.1685229667981216No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA4250450.1678500580498316No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA4111220.16235187230896228No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA3940950.15562791851956476No Hit
CCCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG3918770.1547520314281873No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA3778630.14921790983280248No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA3715950.14674267976573582No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA3706920.14638608551708215No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA3691660.14578346887982246No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA3584590.1415552799315004No Hit
GGGGGGGACGGCGGAGCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAA3573470.14111615168731118No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA3475870.13726193256565028No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG3417760.13496717157016141No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG3387490.1337718107831463No Hit
CGCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG3325440.13132145938459036No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG3181410.12563372188363933No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA3029020.11961584840054607No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA2937600.11600567716999033No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2922730.11541846161323727No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA2827220.11164677648711195No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2789210.11014576348696511No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2776840.10965727280525461No Hit
CGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2776780.1096549034082536No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2769420.10936425737612834No Hit
CCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGCA2744910.10839635870121124No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA2695490.10644476537137024No Hit
GCCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2690350.10624178702828277No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2673590.10557993546599757No Hit
CCGGTGGGGGGGCCGGGCCAAAAAAAAAAAAAAAGATCGGAAGAGCACAC2633180.1039841465858099No Hit
CGCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2602950.10279036539679545No Hit
GGCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2584610.10206611971348337No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA2577480.10178455636986201No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA2555380.10091182847448592No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA2544320.10047506962729771No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)