FastQCFastQC Report
Sat 23 Sept 2023
SRR19165069_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19165069_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258306115
Total Bases12.9 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA36020401.3944849892539322No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA33086401.2808988281210454No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA28432841.100742040117788No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA26576961.0288939539816935No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG26122561.0113024230959455No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA24528870.949604696737435No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG23548740.9116601827254458No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA22782010.881977184318691No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA22744810.8805370325824458No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA21960640.8501788662649353No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA20305490.786101792441112No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA18029370.6979846373362086No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA15460820.5985464184616768No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC14758720.5713654901278663No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA13871220.5370070313666403No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG12489280.4835069429153855No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGA12235750.4736918442677983No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA11494100.4449797868703186No Hit
CGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG10880700.4212327687248132No Hit
GGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG10633000.4116433712767505No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA8213060.3179584037334927No Hit
GCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC8178910.31663632895411714No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG7335750.2839944381494801No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA7107640.27516344318832714No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA6342540.24554354820442406No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA6119160.23689566931080977No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG5949520.2303282676834809No Hit
GGGGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAGATCGGAA5149870.19937081241766189No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG5146870.19925467114860987No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG5016730.1942164628971327No Hit
CGGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAAAAAAAGATCGGA4734200.1832786653153759No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA4312250.16694339582320766No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA4176320.16168103492246014No Hit
CGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA4149470.16064157056444442No Hit
GCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA4022730.1557349890845596No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA3929640.15213112550587507No Hit
GGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA3825030.14808127945403074No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAGATCGGAAGAGC3674680.14226066618670644No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA3666500.14194398765975788No Hit
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA3625760.1403667892260313No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA3418000.1323236192066146No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA3401970.13170303769231326No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAGATCGGAAGAGC3377830.13076848761400792No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAGATCGGAAGA3369210.13043477503426507No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAAAAAAAAAAA3362300.13016726297788186No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA3359250.13004918602101231No Hit
GGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA3342220.12938989075036028No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA3213370.12440162324457553No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA3208250.12420340881206006No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAAAAAAAAAAA3178520.12305244883575443No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA3134750.1213579477202853No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGAT3117070.12067348850800531No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAAAAAAAGATCG3075240.1190540920798565No Hit
CGCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3049360.11805218006550097No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAGATCGGAAGA2989910.1157506472504532No Hit
CCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGCA2903220.11239455171241301No Hit
CCGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA2867990.11103066607617863No Hit
GGCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2787050.10789717463715483No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA2623460.10156399123574757No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)