FastQCFastQC Report
Sat 16 Sept 2023
SRR19165070_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19165070_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142007814
Total Bases7.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA14712881.036061297302978No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA11059580.7788008059894507No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG10218170.7195498411094476No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA9760700.6873354166271441No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA8283310.5832995922322979No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA6905460.4862732412738922No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA6189540.43585911406255434No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG5890000.4147659085858473No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG5845610.41164002425951013No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG5495390.38697800108379954No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG5349000.3766694134169265No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC5152490.3628314425007627No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG4973810.35024903629598864No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG4752380.3346562323676076No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA4687370.330078315267919No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA4657570.32797983919391926No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG4309890.30349667941512004No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA4296100.3025256060909437No Hit
GCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC4169230.29359159067120066No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA4086350.28775529211371426No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA3975170.27992614547253014No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG3954530.27847270432597465No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA3515150.24753215340671325No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA3421000.2409022365487578No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG3301170.23246396849683215No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGAAAAAAAAAAAAAAAG3286340.2314196597660464No Hit
GCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA3285870.23138656299575175No Hit
CGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA3139660.22109065068771494No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA2999000.21118556194379556No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA2981120.20992647629939576No Hit
GGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA2930150.20633723718893382No Hit
CCCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2813860.1981482511941209No Hit
CGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA2813810.19814473026111085No Hit
CGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA2702360.19029657058167235No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA2614550.18411310802939335No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA2607560.18362088159458606No Hit
CGCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2504760.17638184332588908No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGAAAAAAAAAAAAAAAG2466180.17366509141532172No Hit
CCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGCA2419790.1703983697685819No Hit
CGCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2391320.16839355051264995No Hit
GCCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2344050.165064860444933No Hit
GGCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2292450.16143125757854423No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA2215220.15599282445119533No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA2174330.15311340543556287No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGAAAAAAAAAAAAAAAG2157620.1519367096235986No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2109200.14852703809665008No Hit
CCCCCCCGCGGGGGCGCGCCGGAAAAAAAAAAAAAAAGATCGGAAGAGCA2106450.14833338678109642No Hit
GGCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG2104760.1482143792453562No Hit
GCCCCCCGCGGGGGCGCGCCGGAAAAAAAAAAAAAAAGATCGGAAGAGCA2085760.14687642470153087No Hit
CCGGTGGGGGGGCCGGGCCAAAAAAAAAAAAAAAGATCGGAAGAGCACAC2048630.1442617798482554No Hit
GCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAAAAAAAGATCGGAA2031810.14307733798366898No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA1936930.13639601550376657No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAAAAAAAAA1896250.13353138440677637No Hit
CCCCCCCGCGGGGGCGCGCCGAAAAAAAAAAAAAAAGATCGGAAGAGCAC1888130.13295958488594156No Hit
CCGCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG1841680.1296886381195897No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG1841290.12966117484211115No Hit
GCGGTGGGGGGGCCGGGCCAAAAAAAAAAAAAAAGATCGGAAGAGCACAC1840710.12962033201919437No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGAAAAAAAAAAAAAAAG1821470.12826547699692076No Hit
CCCCCCCGCCACGCAGTTTTATCCGGTAAAAAAAAAAAAAAAGATCGGAA1812170.12761058345704834No Hit
GCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1789780.12603390965514052No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1782960.12555365439256744No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1766080.12436498740836895No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA1752700.12342278573487513No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAAAAAAAGATCG1728290.12170386623936061No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAGATCGGAAGA1708270.12029408466212993No Hit
GCCCCCCGCGGGGGCGCGCCGAAAAAAAAAAAAAAAGATCGGAAGAGCAC1702870.11991382389704275No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1698540.11960891109837096No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1688500.11890190774994959No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1653580.11644288813571907No Hit
CGCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1630330.11480565428603809No Hit
CCGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA1623880.1143514539277395No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAAG1605410.11305082127382089No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1586610.11172695046203585No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1561340.10994747091874818No Hit
CCGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1552660.1093362369482006No Hit
GGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAGC1552130.10929891505829391No Hit
GGGCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG1546960.10893485058505303No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGAAAAAAAAAAAAAAAGA1519710.10701594209456672No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA1515000.10668427020501844No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA1509500.10629696757391112No Hit
CCCCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAGATC1499400.10558573910587767No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAA1449700.10208593169387145No Hit
GCGCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG1437480.10122541566621117No Hit
GCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA1428330.10058108492536898No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)