FastQCFastQC Report
Sat 23 Sept 2023
SRR19217700_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217700_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54863851
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA44892818.182584558273168No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT43551687.938137627269365No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT32604545.942809227883037No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA24975204.552214171039506No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC24653634.493601807135267No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG18437733.360633580023393No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA6624681.2074763034771292No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT5937421.0822098507084381No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT5750071.0480616827280316No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA4854790.8848795539343384No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA4636630.8451156664157607No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT3967370.7231300624522329No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC3890570.70913177421687No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC3601070.6563647892671625No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG3496180.6372465542019644No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT3472090.6328556848843877No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA3165760.5770211063018525No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC2950690.5378204311614947No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG2760070.5030762423148167No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC2740700.49954568446170505No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA2687260.48980520889793167No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT2110550.38468863587428453No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG2005460.3655339469334736No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT1695330.30900674471429285No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA1484850.2706426860192515No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA1481940.2701122821290835No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT1418800.2586037935980834No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC1312450.239219445240911No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA1207710.22012855058242264No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAA1164210.21219983263661168No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATAACTGTAGGCACCATCAA1161850.21176967690437917No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA1021000.1860970350039774No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAAT967480.17634197788995892No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA935730.17055492513640721No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATC928380.16921524520763226No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGG906980.16531468051704937No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT897790.1636396249326355No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTA872250.1589844650168651No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC865740.15779789136566444No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATT865440.15774321055224505No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC843890.15381530545495248No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATA825470.15045790351100216No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC818520.14919113133345308No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC808030.1472791255575552No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAACTGTAGGCACCATC802620.14629304822222558No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTAACTGTAGG798450.14553298491569613No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAC773710.14102364050237742No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT754520.13752589113731736No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC729670.13299649709241154No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAT716210.13054315126366176No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA693770.12645302641989167No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAATA692260.1261777996590141No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATT683430.1245683610507035No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACC670120.12214235562866341No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCC667620.12168668218350184No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAACTGTAGGCACCATCAA666520.12148618586763076No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCA652610.11895081881875189No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTT631130.11503567257792385No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCG627710.11441231130494285No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAG622770.11351190057730363No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAACT605440.11035317225544375No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATT599280.10923039288656569No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAACTGTAGGCACCATCAA593010.10808756388610051No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA574020.10462626839665339No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTC567150.10337407776934944No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATGA564870.10295850358736211No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATC548860.10004037084454755No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)