FastQCFastQC Report
Sat 23 Sept 2023
SRR19217701_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217701_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55066281
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA44823958.139999503507418No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT43803037.954601110614316No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT32628475.925308447832168No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA25167574.570413970756442No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC24462364.442348303855857No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG18386423.338961641517066No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA6619651.2021240366677388No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT5965751.0833762316361986No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT5778571.0493844681466686No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA4854700.8816102906967697No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA4637940.8422468188835923No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT3991720.7248936967433846No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC3904510.7090564187547004No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC3617450.6569265137044574No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT3486030.6330607291238717No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG3477220.6314608389842052No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA3162830.574367824113635No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC2940530.5339982919856163No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG2748740.4991693555626174No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC2747450.4989350924207139No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA2662550.4835173088954382No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT2115810.3842296885820199No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG2005520.36420109794594624No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT1693680.3075711613791387No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA1517520.2755806225592028No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA1491220.2708045600537287No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT1424720.2587282042889368No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC1309040.23772079323824322No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA1207530.21928664476179172No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAA1188240.215783593593328No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATAACTGTAGGCACCATCAA1158920.21045910109673108No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA1020250.18527672133878081No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAAT976970.1774171021282516No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA940300.1707578545208092No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATC929400.16877842177139218No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGG895820.1626803161085093No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT894450.1624315250198211No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTA886790.16104047411518493No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC886780.16103865812183685No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATT870920.15815849267176768No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC838000.15218024256985868No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATA834300.15150832503106573No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC824380.14970685962976144No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTAACTGTAGG811580.14738238814420754No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAACTGTAGGCACCATC808530.14682851017304038No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC803630.14593867343247677No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAC794760.1443278873327218No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT761700.13832421332393957No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC754220.136965850299569No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAT738450.13410202878963262No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA705440.12810743474759081No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAATA696440.1264730407343107No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACC691060.12549603631303882No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATT690270.1253525728385398No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCC670760.12180956981641813No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAACTGTAGGCACCATCAA669610.1216007305813879No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCA655340.1190093080736649No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTT642730.11671934046172466No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAG638980.11603834295619128No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCG635260.11536279343070217No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAACT611280.11100804138198474No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATT599050.1087870815172719No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAACTGTAGGCACCATCAA597790.10855826635541267No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA576290.1046538806570213No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTC576040.10460848082331907No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATGA569740.103464405014023No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATC557680.10127431703622768No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)