FastQCFastQC Report
Sat 23 Sept 2023
SRR19217704_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217704_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52997624
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA42105857.944856169401104No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT31657645.97340741162283No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT30848505.8207326426558295No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC25162634.747878886042137No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA18889453.5642069538815555No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG17972963.3912765598699295No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT10145991.9144235598184554No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA7838801.479085175592023No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT7068051.3336541275888143No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA4891390.9229451493900933No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC4657400.8787941134870499No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA3643130.6874138357598824No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC3056530.5767296284829675No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT2969910.5603854995461683No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA2894250.5461093878472741No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC2716550.5125795828129955No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG2658470.5016206009537333No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT2600450.49067294035672243No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA2597700.49015404917020433No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC2581630.4871218377638967No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA2522310.4759288831514409No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG2247410.42405863327005No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA2213950.41774514268790613No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC2178450.41104672918921803No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCAC2001800.3777150462443373No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC1914510.36124449654573193No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT1703510.32143139096197976No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT1619240.3055306781300233No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG1572680.2967453786230115No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATAACTGTAGGCACCATCAA1560730.2944905605579601No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT1464310.27629729212011467No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAACTGTAGGCACCATCAA1418590.2676704902846211No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC1362590.25710397885007075No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATA1342540.25332079038109334No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAACTGTAGGCACCATCAA1335980.2520829990416174No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC1327560.2504942485723511No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACC1326380.2502715970814088No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACAAACTGTAGGCACCATCAA1311090.24738656208436816No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT1234900.23301044590225403No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAACTGTAGGCACCATCAAT1219610.2301254109052134No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT1205670.2274951043088271No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA1192420.22499499222833086No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC1084260.20458653014331357No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATC1070500.20199018733368124No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC1042500.19670693161640604No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATT971740.1833553896680349No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA952790.17977975767366478No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA918260.17326437124803937No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGCA891100.16813961320228243No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT881270.16628481307011048No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAACT827770.1561900208960311No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA815930.15395595847844049No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAAT809630.15276722594205355No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATC791870.14941613231566758No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATT694880.13111531188643477No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGG679050.1281283855291324No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCA677590.12785290148101733No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATT672940.12697550365654128No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTAACTGTAGG602100.1136088666918351No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATG599380.11309563613644265No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAACTGTAGGCACCATCA591660.1116389670601082No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA571900.10791049802534544No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATG568090.10719159787238763No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCAACTGTAGGCACCATC537060.10133661841142162No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)