FastQCFastQC Report
Sat 23 Sept 2023
SRR19217706_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217706_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66346743
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA57069818.601750051242153No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT41587096.268143411350276No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC34122905.143116068259749No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT27505174.14566996905937No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA24851243.7456608834588914No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG24386173.675563998672851No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT15868062.3916863560280572No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA7786211.1735632599176722No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC7607221.146585296583436No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA7531581.135184586227541No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA5778380.870936497967956No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC4885060.7362923602745655No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT4721650.7116626659427727No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG4235960.6384578667260274No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA4146820.6250223918301461No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC4077540.6145802816575336No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT4068330.613192120071365No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA4044520.6096033983160258No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG3568850.5379088465578483No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA3546800.5345853978092038No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC3466560.5224913602767207No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCAC3123180.47073599377741876No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC2860120.4310867226745403No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT2628000.39610083045071254No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT2599980.3918775636054961No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT2502810.37723178061657076No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG2487980.3749965540885707No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC2353810.35477400902708967No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT2306570.3476538403701294No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA2246800.3386451087734631No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC2027780.30563369176991856No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT2011320.3031527862641275No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACAAACTGTAGGCACCATCAA1949650.2938576803988705No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACC1897450.2859899241775893No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATC1854320.2794892282805804No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT1751370.26397226462194234No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATT1639400.24709577680399475No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC1629220.24556141361754563No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC1480810.22319256877462698No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA1380120.20801623977231257No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAACTGTAGGCACCATCAAT1370440.20655723823549257No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATA1358730.2047922684011783No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAACTGTAGGCACCATCAA1306790.19696370023770418No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGCA1248830.18822777781269534No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGG1100130.1658152232129918No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATC1093250.16477824691409493No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC1030690.15534899731249807No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATT1002940.1511664257580813No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATT993660.1497677135409646No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA940060.1416889447007218No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA936750.14119005058017695No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCA898270.135390218024719No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATG892680.13454767478186533No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA767950.11574795766538232No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA766840.11558065480320565No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAACT728220.10975972098585156No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT695300.10479790997426958No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCAT679600.10243155417591486No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)