FastQCFastQC Report
Sat 23 Sept 2023
SRR19217708_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217708_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65276136
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA59750159.15344468306151No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT43614496.681536725764528No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC40390946.1877038800213295No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT35644995.460646445126593No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG25477653.903057313318913No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA23474583.596196318973292No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT9740321.4921716567291912No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA5676930.8696792346899944No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA5373220.8231522772732749No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT4601340.7049038564415026No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC4393780.6731066311890765No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA4245470.6503862299692494No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC3768090.5772538374514079No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC3681250.5639503539241354No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT3508600.5375011780721825No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC3492190.5349872425046728No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG3089950.4733659480089324No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA3028180.46390307171368106No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA2999250.45947113046029564No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT2985590.45737848208417237No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA2881870.4414890611784987No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG2844340.435739639981141No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC2624900.4021224540619255No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT2578570.3950249138521312No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCAC2516970.38558808076507467No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA2355130.36079494656362626No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT2000860.3065224326390888No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACAAACTGTAGGCACCATCAA1994700.30557874933038315No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC1923730.29470647588576626No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT1919140.29400330926450674No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT1853710.2839797380163556No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG1837790.2815408681665839No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC1648920.2526068638621624No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC1552570.23784649262940438No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACC1438580.2203837555580802No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATA1434460.21975259074771214No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC1433760.21964535400808652No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA1322900.20266211835823128No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATAACTGTAGGCACCATCAA1251930.19178984491361437No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATC1241450.19018435772607617No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGCA1238930.18979830546342388No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT1235780.1893157401351085No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC1229740.18839044026748153No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA1166910.17876517690936852No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAACTGTAGGCACCATCAA1134270.17376488093596715No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA1125010.17234629206606225No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGGAACTGTAGGCACCATCAAT1075370.16474167527318098No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATT1024450.15694096844212715No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT980680.15023560830867808No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA978240.14986181167341156No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCA931330.14267541816507032No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA909730.13936639877090765No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATC904660.13858969838533333No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATC884330.13547523707592005No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATT853370.13073230927762022No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATT826350.12659297112807044No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGG821530.12585456957807675No Hit
TTGGATAACTGTGGTAATTCTCGAGCTAATACATGCAACTGTAGGCACCA781650.11974513932626159No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTAACTGTAGG774670.11867583583685162No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAACTGTAGGCACCATCAAT754360.11556443843428477No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATT721740.11056720636772985No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAACTGTAGGCACCATCAA710940.10891269667064853No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCAT682230.10451445839257398No Hit
TGCAGTTAAAAAGCTCGTAGTTGGATCTTGAACTGTAGGCACCATCAATG664450.10179064520608265No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)