FastQCFastQC Report
Sat 23 Sept 2023
SRR19217713_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217713_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72197186
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA48799006.759127703398302No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT36422065.0448032697562475No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT35397554.902898847054787No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC30710524.253700414307007No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG20421832.8286185558534096No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA19061812.6402427928423693No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT8417131.16585291842261No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC4171670.5778161492332956No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT4013970.5559731926393918No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT3634190.5033700343944153No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAA3541440.49052327330320045No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC3035630.42046375602506175No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA2621490.3631014095203101No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTA2617740.36258199869451974No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATC2505900.34709109022614815No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAC2196430.30422653869085703No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATA2181200.30211703819038044No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAT2167230.3001820597273694No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC2071780.28696132284158554No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCC1966430.2723693413757151No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT1924480.26655886560454034No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATAG1874230.25959876053894954No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTT1870160.25903502665602507No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGA1724390.2388444890359023No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCA1692930.2344869784814051No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCG1655020.2292360813065484No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATT1635740.2265656171142183No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATAACTGTAGGCACCATCAA1604290.22220949165525647No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA1586240.21970939421378557No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTC1538530.21310110341419677No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA1403250.19436353101075157No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA1341560.18581887665261634No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGCA1273770.17642931401786213No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAA1273330.17636836981430273No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAACTGTAGGCACCATC1247910.17284745696321185No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGT1150070.15929568224445756No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATTG1105740.15315555373584783No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA1047320.1450638256178018No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATCT1035860.14347650613418644No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATC1033310.143123306772649No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAATG1029710.14262467237989027No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATT1027110.14226454754067563No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCC955880.13239851204172973No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATTA951380.13177521905078127No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG925280.1281601197032804No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC907240.12566140735734493No Hit
CTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAACT899060.12452839920935423No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAC873210.12094792725023935No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCAC856210.11859326483998976No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA816860.11314291390802961No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCA816160.11304595722054873No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAT795850.11023282818806816No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATCG776740.1075859106198405No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAATA765940.10609000744156427No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT752520.10423120923300253No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATGC745750.10329349955550898No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)