FastQCFastQC Report
Sat 23 Sept 2023
SRR19217718_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217718_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69186569
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA66818489.657724174759988No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT35144735.079704125810893No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA27857914.026491037588524No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT20167902.9150021877801167No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT18911532.733410584357782No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC16576922.3959737040869884No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG11624461.6801613619545148No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT9232031.3343673683254909No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC5872430.8487817917376419No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAACTGTAGGCACCATCAA5232270.7562551627614313No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT3078530.44496063968716243No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG2986340.43163579913899186No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCGAACTGTAGGCACCATCAA2974360.42990424919033055No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT2821410.40779735731656236No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT2724330.39376573219001515No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAACTGTAGGCACCATCAAT2581020.37305217433169724No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAA2573420.3719536952323796No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC2343250.33868567756264945No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA2270140.32811859770066065No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCA2269600.32804054786991965No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA2167830.31333104550971447No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC1712290.24748878644350755No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA1591110.22997382627833446No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA1585270.22912973181254298No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAACTGTAGGCACCATCA1515470.21904106850565175No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCAACTGTAGGCACCATCAAT1465000.21174630006584083No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATA1448300.20933253678181385No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCA1400900.2024814960834378No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATA1347080.19470252961958556No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGC1325600.1915978807967772No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCATAACTGTAGGCACCATCAAT1210870.17501518249878817No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATT1092990.15797719352147668No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATC1085960.15696110035460784No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATC1052250.1520887674022396No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATT1031350.14906794987911598No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAACTGTAGG1011350.14617721540722736No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAACTGTAGGCACCATCAAT943630.13638918848541254No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAA918420.13274541768359696No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA909450.1314489232729549No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA891650.12887616959297404No Hit
CCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAC760340.10989705241778935No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA733580.10602924969440239No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT728110.10523863381634085No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC725080.10480068754384973No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)