FastQCFastQC Report
Sat 23 Sept 2023
SRR19217719_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19217719_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70291316
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA67961439.668538571677901No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAAT35653995.07231789485916No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATA28326334.029847726851493No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATT20501822.9166931516832038No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAAT19311712.7473820521442507No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATC16714772.3779281639854344No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAATG11756591.6725522680497262No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAAT9415751.339532467993628No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAACTGTAGGC6077400.8646018236449008No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAACTGTAGGCACCATCAA5344780.7603755775464497No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT3112940.44286267168479243No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCGAACTGTAGGCACCATCAA3036700.4320163816537452No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG3030440.4311258022256974No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAAT2874290.4089111093040284No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCAT2733170.38883466060017996No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAACTGTAGGCACCATCAAT2655190.377740829322359No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAACTGTAGGCACCATCAA2624410.37336191002598385No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCATC2379910.33857809690175666No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAACTGTAGGCACCA2314820.3293180625612416No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGAACTGTAGGCACCATCAA2308550.32842606048235035No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTAACTGTAGGCACCATCA2220820.31594514463209084No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATC1735350.2468797141314014No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCAA1620130.23048793111228702No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAACTGTAGGCACCATCA1582530.22513876394062676No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAACTGTAGGCACCATCA1551230.22068586680038826No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTCAACTGTAGGCACCATCAAT1493300.21244445046383822No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATA1485960.21140022474468967No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAACTGTAGGCACCATCA1419220.20190545301499263No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATA1380880.19645100968091136No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGC1361170.1936469648683203No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCATAACTGTAGGCACCATCAAT1244870.17710153555810507No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATT1113330.1583879863623552No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATC1108850.15775063878445525No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATC1069190.15210840553902846No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCAACTGTAGGCACCATCAATT1059000.15065872432947477No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAACTGTAGG1044610.1486115297656399No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAACTGTAGGCACCATCAAT964450.13720756060393008No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAACTGTAGGCACCATCAATAA934950.13301074061552637No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTTAACTGTAGGCACCATCAATA921320.13107166751579952No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAACTGTAGGCACCA900250.12807414218848884No Hit
CCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAC769940.10953557904649273No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATA737420.104909118503344No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT736600.1047924611341748No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAACTGTAGGCACCATCAATC722530.10279079139733278No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)