FastQCFastQC Report
Sat 23 Sept 2023
SRR19240766_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19240766_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57910041
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGTCGCTGAACCATA21349763.6867112561705837No Hit
TGCCCGAGTTGTAATTT19382103.3469325293691297No Hit
AGAGGTGCACAATCGACCGATCCTG19141233.3053387062875674No Hit
AGATGGATACGAATAAGGCGTC17701473.056718609472233No Hit
TAGATGGATACGAATAAGGCGTC14623222.5251613964493655No Hit
GAGGTGCACAATCGACCGATCCTG13192752.278145511932896No Hit
AGGGGGCATGCCTGTTTGAGCGTCATT10385421.7933712048313004No Hit
GTCAAGGATGCTGGCA8398241.4502217327043507No Hit
GTGGCGTCGCTGAACCATAG7159121.2362484771855022No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT7042731.2161500628189852No Hit
ATAAATCATTTGTATACGACTTAGAT6798051.1738983227451003No Hit
CAGGGGGCATGCCTGTTTGAGCGTCATT6647291.147864840917657No Hit
TGGCGTCGCTGAACCATA6106141.0544181793965575No Hit
TGTGGCGTCGCTGAACCATA5633810.9728554673273329No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATT5571670.9621250311323385No Hit
GATGGATACGAATAAGGCGTC4702920.81210786916901No Hit
AATACTGCCAGCTGGGACTGAGGA3564400.6155063851534831No Hit
AGGGGGCATGCCTGTTTGAGCGTCAT3182210.5495091947871354No Hit
AGAGGTGCACAATCGACCGATCCT3092400.5340006580206013No Hit
TTGCCCGAGTTGTAATTT3033540.5238366175565304No Hit
ATAGATGGATACGAATAAGGCGTC2999660.5179861640919923No Hit
AGAGGTGCACAATCGACCGATCCTGA2974290.5136052312585999No Hit
GCCCGAGTTGTAATTT2958780.5109269392504834No Hit
ATCTTTGAACGCACATTGCGCCCCT2848140.49182144422933494No Hit
TCGAAGAGTCGAGTTGTT2779500.47996857747001076No Hit
AGATGGATACGAATAAGGCGT2738240.47284373361089493No Hit
TGCCCGAGTTGTAATT2735300.4723360496325672No Hit
TCGAATCTTTGAACGCACATTGCGCCCCT2696050.46555829584026714No Hit
TGGCGTCGCTGAACCATAG2601660.44925887722994357No Hit
TCCATCTAAAGCTAAATA2532360.4372920405979336No Hit
ATGCAGCTCTAAGTGGGTGGT2389170.41256575867387146No Hit
AGTCAAGGATGCTGGCA2362030.4078791793637307No Hit
TGTGGCGTCGCTGAACCATAG2323710.4012620194829425No Hit
TAGATGGATACGAATAAGGCGT2319160.4004763180879115No Hit
GAGGTGCACAATCGACCGATCCT2316100.39994791231455007No Hit
ATGGATACGAATAAGGCGTC2280850.39386088502337613No Hit
TCCATCTAAAGCTAAATATT2071350.35768408452689576No Hit
ATGCCTGTTTGAGCGTCATT2013910.3477652519707247No Hit
GAGGTGCACAATCGACCGATCCTGA2006320.3464545984348379No Hit
CCAGGGGGCATGCCTGTTTGAGCGTCATT1967190.33969756643757165No Hit
GTGGCGTCGCTGAACCAT1855360.32038658028233824No Hit
CAGGGGGCATGCCTGTTTGAGCGTCAT1852180.31983745271394304No Hit
AGGTGCACAATCGACCGATCCTG1816490.3136744455076452No Hit
TGAGGTGCACAATCGACCGATCCTG1772320.30604709811896No Hit
AAATACTGCCAGCTGGGACTGAGGA1715380.2962146063754298No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCAT1650210.2849609448558325No Hit
TCCATCTAAAGCTAAATATTG1574050.27180951227439126No Hit
TTGTGGCGTCGCTGAACCATA1523540.2630873633814212No Hit
TTGATGATTCATAATAACTTTTCGAATCGCA1497180.2585354757390001No Hit
TCTTTGAACGCACATTGCGCCCCT1490570.2573940501958892No Hit
TCGAAGAGTCGAGTTGTTT1475020.2547088509227614No Hit
TTGATGATTCATAATAACTTT1425530.24616283728757848No Hit
TATAGATGGATACGAATAAGGCGTC1292880.22325661969398364No Hit
TAGGGGGCATGCCTGTTTGAGCGTCATT1271300.21953015022040823No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATT1234480.21317201277754233No Hit
ATGCAGCTCTAAGTGGGTGGTA1221580.2109444198114106No Hit
TGCCCGAGTTGTAATTTG1221010.21084599128500014No Hit
ACAATCGACCGATCCTG1202460.20764274713602776No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATA1198120.20689330888230595No Hit
ATACGAATAAGGCGTC1195950.206518589755445No Hit
AGAGGTGCACAATCGACCGATC1184680.20457246783852218No Hit
AATACTGCCAGCTGGGACTGAGG1178370.20348284678299572No Hit
TCGAAGAGTCGAGTTGT1173270.20260217049405993No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATT1172670.20249856151889098No Hit
AATCGACCGATCCTG1161470.20056452731573784No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCAT1158500.20005166288865175No Hit
AATGCAGCTCTAAGTGGGTGGT1108480.19141412799206964No Hit
AGGTGCACAATCGACCGATC1100980.19011901580245816No Hit
ATGCCTGTTTGAGCGTCAT1060580.18314267814108437No Hit
GAGGTGCACAATCGACCGATC1039290.17946628633884062No Hit
ATCGACCGATCCTG1017370.1756811051126695No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAA964170.16649444264769214No Hit
TTGGCGTCGCTGAACCATA964020.1664685404038999No Hit
CCATCTAAAGCTAAATA954620.16484533312625352No Hit
AGAGGTGCACAATCGACCGATCC929320.16047648800663084No Hit
AATGCAGCTCTAAGTGGGTGGTA925170.1597598592617125No Hit
ACCATACGCGAAACTCAGGTGCTGCAATCT907930.15678282804185892No Hit
AGATGGATACGAATAAGGCG893910.1543618316554119No Hit
TTAGATGGATACGAATAAGGCGTC887070.15318068933848622No Hit
ACGAATAAGGCGTC879310.15184067992630154No Hit
ATTAAGCCTTTGTTGTCTGATTTGT872920.15073724434075259No Hit
GTGGCGTCGCTGAACC861420.148751405650015No Hit
TTCCATCTAAAGCTAAATATT850620.14688644409697446No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACG846910.14624579526718No Hit
AGGTGCACAATCGACCGATCCT841560.14532194857192382No Hit
ATGATTAATAGGGACGGTCGGGGGC822660.14205826585410292No Hit
ATAAATCATTTGTATACGACTTAGA795550.13737686699272067No Hit
ATCTTTGAACGCACATTGCGCCCC779260.13456388331688454No Hit
AGGGGGCATGCCTGTTTGAGCGTCA770970.13313235264330067No Hit
TTTGAGCGTCATT761060.1314210777367607No Hit
TAGATGGATACGAATAAGGCG755320.13042988520764473No Hit
TTCCATCTAAAGCTAAATA754090.13021748680854844No Hit
TTCCATCTAAAGCTAAATATTG739010.12761344789930298No Hit
GTGGCGTCGCTGAACCA697950.12052314036524339No Hit
GAGGTGCACAATCGACCGATCC695170.12004308544696074No Hit
ATCAGTTTTGGTGGCAGGATA682120.11778959023703679No Hit
TCTTTGAACGCACATTGCGCCCC677910.11706260059460155No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATA675740.11668788146774063No Hit
GATGGATACGAATAAGGCGT668630.11546011511198895No Hit
TGGATACGAATAAGGCGTC665870.11498351382621193No Hit
CCTGTTTGAGCGTCATT657060.11346218870748165No Hit
CGAATCTTTGAACGCACATTGCGCCCCT655300.11315826904698617No Hit
CCATCTAAAGCTAAATATT654300.11298558742170463No Hit
GAATACTGCCAGCTGGGACTGAGGA632860.10928329337566865No Hit
AAGAGGTGCACAATCGACCGATCCTG628980.10861328866957631No Hit
TCGAAGAGTCGAGTTG623070.10759274026416249No Hit
AATCTTTGAACGCACATTGCGCCCCT602730.10408039600593617No Hit
TGCCCGAGTTGTAAT597450.1031686370244497No Hit
TGATGTTGACGCAATG594900.1027282988799818No Hit
TTGTGGCGTCGCTGAACCATAG593660.10251417366463271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)