FastQCFastQC Report
Sat 23 Sept 2023
SRR19240767_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19240767_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84821489
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length10-134
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTG43574895.137246529591104No Hit
TGCCCGAGTTGTAATTT40069904.724026950293221No Hit
AGATGGATACGAATAAGGCGTC30527703.5990525938538993No Hit
GTGGCGTCGCTGAACCATA28796963.395007602377742No Hit
TAGATGGATACGAATAAGGCGTC26387663.110964015262689No Hit
GAGGTGCACAATCGACCGATCCTG21205172.499976155806461No Hit
GTGGCGTCGCTGAACCATAG14523161.7122029065063924No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATT11568061.3638124178650057No Hit
ATAAATCATTTGTATACGACTTAGAT10558011.2447329237523759No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT10338871.2188974895265043No Hit
TGTGGCGTCGCTGAACCATA10147241.1963053372005765No Hit
AGGGGGCATGCCTGTTTGAGCGTCATT9581591.1296182268151411No Hit
CAGGGGGCATGCCTGTTTGAGCGTCATT9145341.0781866845086863No Hit
GATGGATACGAATAAGGCGTC8144300.9601694212182481No Hit
AGAGGTGCACAATCGACCGATCCTGA7956050.9379757528189585No Hit
TTGCCCGAGTTGTAATTT6470250.7628078776122404No Hit
TGGCGTCGCTGAACCATA6331520.7464523524221557No Hit
GTCAAGGATGCTGGCA5832340.6876016996117575No Hit
ATAGATGGATACGAATAAGGCGTC5535890.6526518297739385No Hit
GCCCGAGTTGTAATTT5224200.615905245426663No Hit
AGAGGTGCACAATCGACCGATCCT5132900.6051414636213236No Hit
TGTGGCGTCGCTGAACCATAG4942180.5826565954294908No Hit
TGCCCGAGTTGTAATT4755880.5606928216032614No Hit
TGGCGTCGCTGAACCATAG4604750.5428754027178183No Hit
GAGGTGCACAATCGACCGATCCTGA4130700.4869874425335778No Hit
AATACTGCCAGCTGGGACTGAGGA4082260.48127662554945244No Hit
ATGGATACGAATAAGGCGTC3981010.4693397919482409No Hit
TCGAAGAGTCGAGTTGTT3741000.44104389631735896No Hit
AAGAGGTGCACAATCGACCGATCCTG3632600.4282641159482593No Hit
AGTCAAGGATGCTGGCA3606750.4252165391720487No Hit
TTGTGGCGTCGCTGAACCATA3288290.38767180802496876No Hit
TGCCCGAGTTGTAATTTG3164500.37307762894848495No Hit
TTGATGATTCATAATAACTTTTCGAATCGCA3149260.37128091443902855No Hit
AGATGGATACGAATAAGGCGT3075190.36254845750231995No Hit
ATGCCTGTTTGAGCGTCATT2952430.3480757099182732No Hit
TGAGGTGCACAATCGACCGATCCTG2932850.34576733261544135No Hit
GAGGTGCACAATCGACCGATCCT2801710.33030662784049925No Hit
CCAGGGGGCATGCCTGTTTGAGCGTCATT2794190.3294200600510562No Hit
TCGAATCTTTGAACGCACATTGCGCCCCT2779080.3276386718464704No Hit
TAGATGGATACGAATAAGGCGT2777880.32749719826304863No Hit
TTGATGATTCATAATAACTTT2699880.31830141534063383No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATT2665390.3142352287637865No Hit
AGGTGCACAATCGACCGATCCTG2580140.3041847096081985No Hit
ATCTTTGAACGCACATTGCGCCCCT2403420.28335036655628626No Hit
TATAGATGGATACGAATAAGGCGTC2399760.28291887212684985No Hit
ATGCAGCTCTAAGTGGGTGGT2316850.2731442264589342No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATT2301950.2713875961314473No Hit
TCCATCTAAAGCTAAATATT2141510.25247257802795703No Hit
ACAATCGACCGATCCTG2119100.24983055885755556No Hit
ATACGAATAAGGCGTC2112680.2490736751862491No Hit
TCCATCTAAAGCTAAATA2002380.23606989497673164No Hit
AGGGGGCATGCCTGTTTGAGCGTCAT2000840.2358883372113404No Hit
AAATACTGCCAGCTGGGACTGAGGA1962880.2314130561890985No Hit
AATCGACCGATCCTG1844320.2174354661470279No Hit
GTGGCGTCGCTGAACCAT1771090.20880204071871458No Hit
CAGGGGGCATGCCTGTTTGAGCGTCAT1632100.1924158629188884No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCAT1585870.1869655931175648No Hit
TTAGATGGATACGAATAAGGCGTC1570810.18519009964562164No Hit
TCGAAGAGTCGAGTTGTTT1546670.1823441227257871No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCAT1524020.17967380883870124No Hit
TCCATCTAAAGCTAAATATTG1454180.17144004628355441No Hit
TTGTGGCGTCGCTGAACCATAG1450080.17095667820686336No Hit
ATGATTAATAGGGACGGTCGGGGGC1421320.16756602799085502No Hit
AATACTGCCAGCTGGGACTGAGG1379380.16262152625026424No Hit
AGAGGTGCACAATCGACCGATC1346680.1587663711020211No Hit
ATGCAGCTCTAAGTGGGTGGTA1330010.15680106723898704No Hit
TCTTTGAACGCACATTGCGCCCCT1324170.15611256246633445No Hit
AGAGGTGCACAATCGACCGATCC1232960.14535939117975163No Hit
TGGATACGAATAAGGCGTC1210130.14266785625515252No Hit
TAGGGGGCATGCCTGTTTGAGCGTCATT1204630.1420194356644694No Hit
ACGAATAAGGCGTC1191490.14047029992600105No Hit
ATCGACCGATCCTG1177130.1387773327110539No Hit
CCTGTTTGAGCGTCATT1159370.13668352367641176No Hit
AATGCAGCTCTAAGTGGGTGGT1156360.13632866077132882No Hit
TTTGAGCGTCATT1148240.13537135619017487No Hit
GGTGCACAATCGACCGATCCTG1110450.13091611725891772No Hit
GAATACTGCCAGCTGGGACTGAGGA1107670.13058837012399063No Hit
TTGGCGTCGCTGAACCATA1094350.12901801334800903No Hit
ACCATACGCGAAACTCAGGTGCTGCAATCT1091790.12871620303670925No Hit
ATATAGATGGATACGAATAAGGCGTC1078550.12715527783295574No Hit
GTGCACAATCGACCGATCCTG1059460.12490466891002114No Hit
ATGCCTGTTTGAGCGTCAT1040200.12263401789610177No Hit
AAGAGGTGCACAATCGACCGATCCT1039280.12252555481547842No Hit
AGAGGTGCACAATCGACCG1023720.12069111401710952No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATA1011550.11925633609190708No Hit
TCGAAGAGTCGAGTTGT1006630.11867629439987785No Hit
AATGCAGCTCTAAGTGGGTGGTA1006300.11863738916443685No Hit
AGGTGCACAATCGACCGATCCT1002140.11814694740857473No Hit
TAGAGGTGCACAATCGACCGATCCTG985560.11619225406429733No Hit
TTGGCGTCGCTGAACCATAG954280.11250450932310326No Hit
AGGTGCACAATCGACCGATC919180.10836640700801657No Hit
GTGCCCGAGTTGTAATTT903220.10648480834850706No Hit
GTGGCGTCGCTGAACC883720.10418586261790334No Hit
GAGGTGCACAATCGACCGATC879130.10364472616131509No Hit
ATTAAGCCTTTGTTGTCTGATTTGT871240.10271453735031698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)