FastQCFastQC Report
Fri 30 Jun 2023
SRR1930240.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1930240.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33753571
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATG1999320.592328438374713TruSeq Adapter, Index 10 (100% over 49bp)
AACCAAAAACCTTGGTGCAAATCCAAATAAAAGTACCAAGATCGGAAGAG595960.17656205916701376No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG462170.13692477160416597No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA418990.12413205109468269No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)