FastQCFastQC Report
Fri 30 Jun 2023
SRR1944937.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944937.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20126894
Total Bases588.3 Mbp
Sequences flagged as poor quality0
Sequence length25-49
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGGTGCACAATCGACCGATCCTGA208405510.354578307015478No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAG207922310.330570628533147No Hit
CAAGAGGTGCACAATCGACCGATCCTGA16060707.979721063766719No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC2668531.3258528613505889No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA2598271.2909443454116665No Hit
GTTTCTTTACTTATTCAATGAAGCGGAG1792200.8904503596034242No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCA1645530.8175777146737097No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG1299680.6457429546754706No Hit
CAATATAGATGGATACGAATAAGGCGTCC954850.47441497928095616No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGC822990.40890064805826476No Hit
AACTATGCCGACTAGGGATCGGGTGGTG818880.40685860421384445No Hit
AAAGAGGTGCACAATCGACCGATCCTGA788970.3919978909810923No Hit
AACTATGCCGACTAGGGATCGGGTGGTGT720390.3579240790953636No Hit
TCCGATATAGTGTAACGGCTATCACATCACG710310.3529158547762014No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT693980.34480233264009835No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCA653950.32491352118215555No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGC552050.27428474557475185No Hit
CAATATAGATGGATACGAATAAGGCGTC526720.26169959458225395No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCG519500.2581123545441239No Hit
TAAGAGGTGCACAATCGACCGATCCTGA368790.1832324451055389No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGC338060.1679643167992041No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGT317920.15795780511389387No Hit
TGCGTGCCTTGTTGTAGACGGCCTTGGT290550.1443590849139465No Hit
AAACTATGCCGACTAGGGATCGGGTGGTG275530.13689643320027423No Hit
TGCTCTGCTAGGCGGACTACTTGCGTGCCT274820.13654367136826973No Hit
CAAGAGGTGCACAATCGACCGATCCTG264010.13117274826408884No Hit
ACCATACGCGAAACTCAGGTGCTGCAATCT263770.1310535048279183No Hit
AATATAGATGGATACGAATAAGGCGTCC237980.11823980391609357No Hit
AAGAGGGGCACAATCGACCGATCCTGA231020.11478174426714824No Hit
CCAAGAGGTGCACAATCGACCGATCCTGA224780.11168141492671448No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGTG223740.1111646933699755No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCC220570.10958968631722313No Hit
AGTTTCTTTACTTATTCAATGAAGCGGA218410.10851649539168837No Hit
TCAATATAGATGGATACGAATAAGGCGTCC211220.10494416078307961No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGT205970.10233571061684928No Hit
TGTGGCGTCGCTGAACCATAGCAGGCTAGC204870.10178917820106768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)