FastQCFastQC Report
Fri 30 Jun 2023
SRR1944940.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944940.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23914685
Total Bases733.4 Mbp
Sequences flagged as poor quality0
Sequence length25-47
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCTTTACTTATTCAATGAAGCGGAG10319594.315168692374581No Hit
TCCGATATAGTGTAACGGCTATCACATCACG2757111.1528941317855534No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC2722251.1383173142360017No Hit
CAAGAGGTGCACAATCGACCGATCCTGA1505210.6294082485301395No Hit
AACTATGCCGACTAGGGATCGGGTGGTGT1239170.518162794115833No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG1135870.4749675774529332No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT1084990.4536919470191642No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGC1067570.44640771977552707No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAT910410.38069077639952187No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGC841920.3520514696304802No Hit
CAATATAGATGGATACGAATAAGGCGTCC815150.3408575107721469No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCG797460.3334603821877646No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAT749840.31354793090521577No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAT699490.2924939216217985No Hit
AACTATGCCGACTAGGGATCGGGTGGTG597780.24996356840995396No Hit
TCCGATATAGTGTAACGGCTATCACATCACGC540580.22604521029651864No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGC466000.19485935106400104No Hit
ACCATACGCGAAACTCAGGTGCTGCAATCT439020.1835775800517548No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGTG406650.17004196375574257No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGT352840.14754114469833077No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTT347680.1453834746307551No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGA343890.14379867432918308No Hit
AAGAGGTGCACAATCGACCGATCCTGA336930.14088832865663922No Hit
AAACTATGCCGACTAGGGATCGGGTGGTG330730.1382957793506375No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGT325560.13613392775192315No Hit
TCCTTGTTAGCTCAGTTGGTAGAGCTTTCGG321310.13435677701797033No Hit
GCCAGATCGGGGTTCAATTCCCCGTCGCGGA318330.13311068073863402No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA310040.12964419142464137No Hit
TCCGATGTAGTGTAACGGCTATCACATCACG308450.1289793279735861No Hit
TGCTCTGCTAGGCGGACTACTTGCGTGCCT295640.12362278658489542No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTG294860.12329662715607585No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGT283150.11840005419264356No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCGC264320.11052623105844799No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGC264130.11044678196681244No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCT260650.10899160913054051No Hit
TCAATATAGATGGATACGAATAAGGCGTCC256810.10738590117327493No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCA250970.10494388698826683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)