FastQCFastQC Report
Fri 30 Jun 2023
SRR1944941.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944941.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33756395
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length25-47
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGAGGTGCACAATCGACCGATCCTGA16701004.947506983491572No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAG15985394.735514559537533No Hit
AAGAGGTGCACAATCGACCGATCCTGA8148372.4138744673416697No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCA5032521.4908345514975754No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC3754611.1122662831738994No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA3232120.9574837597438944No Hit
TCCGATATAGTGTAACGGCTATCACATCACG2715980.804582361357011No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG1515130.4488423600920655No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCA1472880.4363262131516117No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT1409600.4175801355565368No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGC1266730.3752563032871253No Hit
CAATATAGATGGATACGAATAAGGCGTCC1257600.3725516305873302No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGC1216010.3602310021552953No Hit
AACTATGCCGACTAGGGATCGGGTGGTGT1157030.34275875726658606No Hit
AACTATGCCGACTAGGGATCGGGTGGTG1139940.33769601285919304No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCG869080.257456401964724No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAT584850.17325606007395045No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAT549660.16283136869325057No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGC531110.15733611364602174No Hit
ACCATACGCGAAACTCAGGTGCTGCAATCT526730.15603858172651433No Hit
TGCTCTGCTAGGCGGACTACTTGCGTGCCT515250.15263774464068217No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGT487010.1442719224016664No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGTG472110.13985794395402706No Hit
TGCGTGCCTTGTTGTAGACGGCCTTGGT468530.13879740416593656No Hit
ATTACCCAATCCTAATTCAGGGAGGTAGT464000.1374554362217885No Hit
TCCGATATAGTGTAACGGCTATCACATCACGC454240.13456413221850258No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAT433830.12851787046572952No Hit
GTTTCTTTACTTATTCAATGAAGCGGAG425760.12612721234006177No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGT424770.12583393457743342No Hit
TTGCGTGCCTTGTTGTAGACGGCCTTGGT395020.1170207896903683No Hit
AAAGAGGTGCACAATCGACCGATCCTGA388740.11516040145874583No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTT382540.11332371244026501No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGA379950.11255645041480287No Hit
TTCGGTGCCCGAGTTGTAATTTGGAGAGGGC356490.10560665616100298No Hit
ACTATGCCGACTAGGGATCGGGTGGTGT352350.10438022188092064No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCC351060.10399807206901092No Hit
TCAATATAGATGGATACGAATAAGGCGTCC341180.10107121924601249No Hit
TTGCGTGCCTTGTTGTAGACGGCCTTGG338010.10013213792527313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)