FastQCFastQC Report
Fri 30 Jun 2023
SRR1944969.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944969.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7865151
Total Bases238.8 Mbp
Sequences flagged as poor quality0
Sequence length25-48
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCTTTACTTATTCAATGAAGCGGAG5543107.047671430593004No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA2065252.6258237127297366No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG1535611.9524227824742335No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC873721.11087504867993No Hit
CAAGAGGTGCACAATCGACCGATCCTGA849451.0800174084388208No Hit
AACTATGCCGACTAGGGATCGGGTGGTG414710.5272753186811036No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCA397460.505343126915173No Hit
TCAATATAGATGGATACGAATAAGGCGTCC354220.4503664328885739No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGC345490.439266836707903No Hit
AAGAGGTGCACAATCGACCGATCCTGA258090.3281437317605218No Hit
AACTATGCCGACTAGGGATCGGGTGGTGT249710.3174891365722031No Hit
TCCGATATAGTGTAACGGCTATCACATCACG226010.28735621223292473No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGCA207960.2644068753416177No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAGC199340.2534471366156861No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTG196450.2497726998502635No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT184010.23395609315065916No Hit
CCAAGAGGTGCACAATCGACCGATCCTGA183580.2334093776457693No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAT178100.22644193353694034No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAT155800.1980890131670708No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGC154660.19663958136340928No Hit
TAATGATTAATAGGGACGGTCGGGGGCATCA148110.18831170564938932No Hit
AAAACTATGCCGACTAGGGATCGGGTGGTG133730.17002852202074697No Hit
TGGTCCTATAGTGTAGTGGTTATCACTTTCGG133670.16995223613634372No Hit
GCAAGAGGTGCACAATCGACCGATCCTGA130630.16608708465991306No Hit
ATGTACACGGAGTCGACCCGCAACGCGA125090.1590433546666809No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCT120100.15269891194714505No Hit
TTGAGATTAAGCCTTTGTTGTCTGATTTGT114640.14575689646645054No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGA110150.140048169450275No Hit
TTCCGATATAGTGTAACGGCTATCACATCACG109140.1387640237294872No Hit
AAATGATTAATAGGGACGGTCGGGGGCATCA107400.13655173308179336No Hit
TCCTTGTTAGCTCAGTTGGTAGAGCTTTCGG98500.12523599356197992No Hit
TAATGATTAATAGGGACGGTCGGGGGCATC92160.11717511844337127No Hit
CAGTTTCTTTACTTATTCAATGAAGCGGAG91420.11623425920239802No Hit
TAGTCAGAATCCATGCTAGAACGCGGTGATTT83580.10626623697370845No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATT83410.10605009363456594No Hit
AAGTTTCTTTACTTATTCAATGAAGCGGAG80560.10242651412541222No Hit
TGTGGCGTCGCTGAACCATAGCAGGCTAGC79200.10069736741227218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)