FastQCFastQC Report
Fri 30 Jun 2023
SRR1944970.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944970.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15299282
Total Bases461.2 Mbp
Sequences flagged as poor quality0
Sequence length25-48
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCTTTACTTATTCAATGAAGCGGAG12157307.946320618183258No Hit
CAAGAGGTGCACAATCGACCGATCCTGA3054601.9965642832127677No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG2828541.848805715196308No Hit
ATTTTCTTTACTTATTCAATGAAGCGGAG2523801.6496198971951754No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA2519291.6466720464398263No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAT1077250.7041180102438794No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC989110.6465074635528647No Hit
AAGAGGTGCACAATCGACCGATCCTGA771060.5039844353480117No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCA662130.4327850156628265No Hit
TCCGATATAGTGTAACGGCTATCACATCACG509720.3331659616444746No Hit
TCAATATAGATGGATACGAATAAGGCGTCC505220.3302246471435718No Hit
AACTATGCCGACTAGGGATCGGGTGGTG449960.2941053050724864No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT430450.2813530726474615No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGC415650.27167941606671475No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAT337560.22063780509438288No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGC326030.21310150371762543No Hit
TTGAGATTAAGCCTTTGTTGTCTGATTTGT315220.20603581266101248No Hit
AACTATGCCGACTAGGGATCGGGTGGTGT305710.19981983468243805No Hit
AAGTTTCTTTACTTATTCAATGAAGCGGAG287950.18821144678554197No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGC259610.16968770168430128No Hit
TTGATGATTCATAATAACTTTTCGAATCGCA236840.15480465030973348No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGCA233170.15240584492788614No Hit
GTTTCTTTACTTATTCAATGAAGCGGAG227330.14858867233115908No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAGC223080.1458107641914176No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCA221440.14473881846219974No Hit
CCAAGAGGTGCACAATCGACCGATCCTGA213570.13959478621284319No Hit
AGGTTCTTTACTTATTCAATGAAGCGGAG202040.1320584848360858No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCG182970.11959384760670468No Hit
TCCTTGTTAGCTCAGTTGGTAGAGCTTTCGG180020.11766565254500178No Hit
ATTAAGCCATGCATGTCTAAGTATAAGCAA176890.11561980490326278No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGA171060.11180916856098214No Hit
TAAACTATGCCGACTAGGGATCGGGTGGTG167120.10923388430908065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)