FastQCFastQC Report
Fri 30 Jun 2023
SRR1944971.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1944971.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25726778
Total Bases776.7 Mbp
Sequences flagged as poor quality0
Sequence length25-48
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCTTTACTTATTCAATGAAGCGGAG321926612.513288683098988No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAG9831313.821430728713872No Hit
ATTTTCTTTACTTATTCAATGAAGCGGAG2360330.9174603986554399No Hit
TCAAGAGGTGCACAATCGACCGATCCTGA2150040.8357206642821733No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCA1887840.7338035101014204No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAT1526510.5933545195593478No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAT1487490.5781874434490009No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGC1071080.41632885392799673No Hit
AAGAGGTGCACAATCGACCGATCCTGA924630.3594037310074351No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGC912110.3545372063303069No Hit
AAGTTTCTTTACTTATTCAATGAAGCGGAG817310.3176884412031697No Hit
CAAGAGGTGCACAATCGACCGATCCTGA779420.30296059615393733No Hit
ATGTACACGGAGTCGACCCGCAACGCGA768080.2985527375406279No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAA679840.26425384476827996No Hit
CAGTTTCTTTACTTATTCAATGAAGCGGAG561180.21813069635070512No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATT553170.21501720891749446No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCA544800.21176378946481367No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGCA522500.2030957782587466No Hit
TTAGTTTCTTTACTTATTCAATGAAGCGGAG520810.20243887516734507No Hit
GTTTCTTTACTTATTCAATGAAGCGGAG498740.19386026497371728No Hit
TCCGATATAGTGTAACGGCTATCACATCACG477540.1856198238271423No Hit
TTGATGATTCATAATAACTTTTCGAATCGCA460870.17914019392556657No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTT422240.16412471083631228No Hit
TCAATATAGATGGATACGAATAAGGCGTCC418180.16254658861673232No Hit
TTGAGATTAAGCCTTTGTTGTCTGATTTGT347740.1351665568070747No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATT312370.12141823589413334No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGC302430.11755455735654112No Hit
TAGTTTCTTTACTTATTCAATGAAGCGGAGC292230.1135898168048871No Hit
AGTTTCTTTACTTATTCAATGAAGCGGA287970.11193395457449043No Hit
TGGTCCTATAGTGTAGTGGTTATCACTTTCGG280890.10918195819157765No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCT271690.1056059176940074No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATA269840.1048868225939525No Hit
TGTTTCTTTACTTATTCAATGAAGCGGAG263640.1024768822586334No Hit
TTCCGATATAGTGTAACGGCTATCACATCACG259180.10074328001741999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)