FastQCFastQC Report
Sat 23 Sept 2023
SRR19641911_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19641911_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43431259
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG2619440.6031232021157849No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG2028370.467029979490118No Hit
CGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA1765060.40640313926888466No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA1296260.2984624507431387No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG1120930.25809290953320047No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1068840.2460992438648854No Hit
CGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA979780.22559327603190135No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG936040.21552218875349666No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA861210.19829266289517417No Hit
GGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG841640.19378669174660584No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG818980.18856925146931613No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA808970.1862644598905134No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA796530.18340016346291044No Hit
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA773070.1779985240584437No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG691180.15914344090278387No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG635620.14635081152033838No Hit
CGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA634240.146033068025958No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG615590.14173892587364323No Hit
GCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG614120.1414004599774554No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG582650.13415452681212856No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAGATCGGAAGA571760.1316471161934311No Hit
CGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG546320.1257895839492012No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAGATCGGAA509560.11732563405541616No Hit
CCGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG507690.11689506859563985No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA503550.11594183811249865No Hit
CGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAGA501200.1154007531764161No Hit
CCGGGGCCGCCGGTGAAATACCACTACAAAAAAAAAAAAAAAGATCGGAA476850.10979419224296492No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG465600.10720389201703778No Hit
GCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA459110.10570957659781403No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAATCGGAAG453090.1043234781658068No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAGATCGGAAGA449220.10343241488808787No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAATCGGAAG446570.10282225527931392No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG441140.10157200370359974No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)