FastQCFastQC Report
Sat 1 Jul 2023
SRR1964313.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1964313.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65269559
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAG46569347.134924873630601No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCA24050163.684743756273886No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACAGC5553650.8508790445481637No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAGA4683250.7175243822315392No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACAGCA4465730.6841979735147284No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAGAC4281310.6559428415932763No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACAGC3075850.4712533755590412No Hit
TCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACAG1791680.2745046890848458No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCTTGGCCGTACAGCAGACCA1264660.19375954416974076No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGAGCGAGCGGAACCGGCATGTCGTC1016280.1557050508032389No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGCGCCTT938940.14385572913094144No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCGCCTTGGCCGTACAGCA915890.1403242206677082No Hit
CTCCCGGGGCTCATAAGTGAGTCTATGATAGATAAGGTTAATGCACTACT888420.13611552055989837No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACAGCAG852870.13066887735521546No Hit
CCTCCCGGGCGATGCGGACAGACTCGCAGCGAGCGGAACCGGCATGTCGT792780.12146244162611854No Hit
CTCCCGGGATCGTATTCACTCAGATACTATCTATTCCAATTACGTGATGA755990.11582581705508384No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCCGCCTTGGCCGTACAGCA744900.11412670951246966No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGCTATCTATTCCAATTACGTGATGA722690.11072389810386186No Hit
AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCCTTGGCCGTA696900.10677259210530288No Hit
CTCCCGGGGCGCATAAGTGAGTCTATGATAGATAAGGTTAATGCACTACT688080.10542127303173597No Hit
CTCCCGAAATCGTATTCACTCAGATACTATCTATTCCAATTACGTGATGA675420.10348162456559575No Hit
GTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACA659960.10111298591737077No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)