FastQCFastQC Report
Sat 1 Jul 2023
SRR1964316.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1964316.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56929421
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAG17376963.052369002663842No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCA6494361.1407739418252647No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACTCGTC3173040.5573638277473435No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCCATGTCGTC2472250.4342657902668639No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACAGC2385140.41896438750009424No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACTCGT1948340.34223780354274114No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCTTGGCCGTACAGCAGCTTA1876880.32968541872224555No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGATGTCGTC1703490.2992284077507129No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACCTAC1419390.2493245100806488No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACGATGA1271260.22330457216489166No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGGCACTACT1126710.19791348308285098No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAGCT1045100.18357818885950025No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGCGTGATGA952380.16729135537844306No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCTTGGCCGTACAGCAGCTT941100.16530995458394002No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACGATG884920.1554415949531614No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTCGCCTTGGCCGTACAGCA818030.14369195850419766No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCCATGAGCAG751540.13201258449475536No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAGC749210.1316033057845433No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCGCCTTGGCCGTACAGCAGCT730590.1283325892248228No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGACGCCTTGGCCGTACAGC659420.11583114467298024No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGATGAGCAG610650.10726439673433531No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCTTGGCCGTACCTACTAGGC588270.10333321324311377No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACCTACT583480.10249182052984519No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)