FastQCFastQC Report
Fri 30 Jun 2023
SRR1964329.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1964329.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23506757
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC55

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGACGCCTTGGCCGTACAGC730090.31058729198587454No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACAGC621990.2646005146520211No Hit
TCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACAG525800.22368036560721669No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATCGCCTTGGCCGTACA480530.2044220731936779No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCGCCTTGGCCGTACAGCAG405210.17238022241860074No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGCGCCTT395600.16829203620048483No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCGTCATAAGGTTAATGCACTA382990.16292762119419535No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCGCCTTGGCCGTACAGCA375620.159792352471249No Hit
AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCCTTGGCCGTA353840.15052693146910906No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTCGCCTTGGCCGTAC331150.1408743877345565No Hit
AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCGCCTTGGCCG286190.12174797229579563No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCCAGTATTCCAATTACGTGAT248850.10586317797899557No Hit
GTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCGCCTTGGCCGTACA248580.10574831738805995No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)