FastQCFastQC Report
Sat 23 Sept 2023
SRR19749670_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19749670_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90232571
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1233830.13673887226376383No Hit
CACGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGTCCTGGAAT1189560.1318326616228191No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1149160.12735534267332357No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1094700.12131982806962245No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1065710.11810701924917999No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1006120.11150297379867409No Hit
CCCAGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT953560.10567802617527103No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)