FastQCFastQC Report
Sat 23 Sept 2023
SRR19749673_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19749673_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122001835
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1434240.11755888753640469No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1316890.10794017975221439No Hit
CCCAGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1311520.1075000224381871No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)