FastQCFastQC Report
Sat 23 Sept 2023
SRR19749674_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19749674_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104389529
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1293840.12394346563245821No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1290530.12362638402171544No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1252020.11993731670156303No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1146700.10984818218693179No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1068960.10240107511166183No Hit
CACGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGTCCTGGAAT1056200.10117873029200083No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)