FastQCFastQC Report
Sat 23 Sept 2023
SRR19749675_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19749675_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89024970
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1044310.11730529086390032No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT1040700.11689978665536198No Hit
CCCGGTTGAACCCCATTCGTGATGGGGATCGGGGATTCATCTGGAATTCT1014170.11391972387072974No Hit
CACGAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGTCCTGGAAT966270.10853921096519324No Hit
CCCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTCAACTGGAATTCT958420.10765743588568466No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)