FastQCFastQC Report
Sat 1 Jul 2023
SRR1991276_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1991276_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80717688
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length1-48
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATAGTGGGTGATAGCCCCGTAAGCG1632378720.22330842776369No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGCGTC1321182816.367946515019113No Hit
TAAAGCTGAATGTGTTGGGAAACAC25851453.20269951240427No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGCGT10657821.3203822190744612No Hit
GCCATAGTGGGTGATAGCCCCGTAAGCG7513340.930817047187972No Hit
GCCATAGTGGGTGATAGCCCCGTAAGCGTC6479550.8027422688320806No Hit
TCCGCGGTAGCTCAGTGGTAGAGCAGC5452470.6754987828690039No Hit
AAAGCTGAATGTGTTGGGAAACAC4876030.6040844480084712No Hit
ATAAAGCTGAATGTGTTGGGAAACAC4846630.6004421236643943No Hit
GCGCCCGTAGCTCAGCTGGATAGAGCATC4600750.5699803988439311No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGC4454120.5518146158993057No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGCGTCA3599320.44591465503818695No Hit
ATAGTGGGTGATAGCCCCGTAAGCG3123960.3870229781606232No Hit
AGTGGGTGATAGCCCCGTAAGCGTC2931990.363240086856799No Hit
AGTGGGTGATAGCCCCGTAAGCG2870700.3556469555966469No Hit
ATAGTGGGTGATAGCCCCGTAAGCGTC2850560.3531518395323711No Hit
ACCCATAGTGGGTGATAGCCCCGTAAGCG2339380.289822473607024No Hit
ACCCATAGTGGGTGATAGCCCCGTAAGCGTC1875320.2323307377188504No Hit
GGAGGTCGCGGGTTCGAGCCCCGTCAT1821220.22562836537141648No Hit
AACACAGCCATAGTGGGTGATAGCCCCGTAAGCG1716610.212668380689992No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGCGTCAAATAGCG1701230.2107629742814239No Hit
AGGCATAGTGGGTGATAGCCCCGTAAGCG1681430.20830998033541298No Hit
TAGCCATAGTGGGTGATAGCCCCGTAAGCG1601260.1983778326257313No Hit
GCGGTCGTGGCGGAATTGGTAGACGCGCAG1430140.17717801828020643No Hit
GGGTGATAGCCCCGTAAGCG1425660.17662299742777568No Hit
ATGTACACGGAGTCGACCCGCAACGCGA1336160.16553496923747368No Hit
CCATAGTGGGTGATAGCCCCGTAAGCG1334190.16529090872870392No Hit
AGCCATAGTGGGTGATAGCCCCGTAAGCGCC1302150.16132151852515897No Hit
AGGCATAGTGGGTGATAGCCCCGTAAGCGTC1278830.15843243676652383No Hit
AACACAGCCATAGTGGGTGATAGCCCCGTAAGCGTC1278550.15839774796324693No Hit
GCCGCCGTAGCTCAGTGGTAGAGCGCATC1211120.1500439408026652No Hit
TAGTGGGTGATAGCCCCGTAAGCG1170340.14499176438254774No Hit
TGGGTGATAGCCCCGTAAGCG1167730.14466841518057355No Hit
TAGTGGGTGATAGCCCCGTAAGCGTC1142120.14149562856656647No Hit
TGGCTGGGCACTCTAATCATACTGCCGG1128510.13980950495014177No Hit
AAAAGCTGAATGTGTTGGGAAACAC1113170.13790905408489895No Hit
CGGAGGTCGCGGGTTCGAGCCCCGTCAT1108950.13738624426408247No Hit
TAGCCATAGTGGGTGATAGCCCCGTAAGCGTC1102830.13662804613531548No Hit
CCATAGTGGGTGATAGCCCCGTAAGCGTC1062580.13164153066425788No Hit
AGGTGGGCTACACACGTGCTACAATGGCGAC1031830.127831956732953No Hit
AACCATAGTGGGTGATAGCCCCGTAAGCG964120.11944346076909439No Hit
CGGAGCGTGGCGCAGCCTGGTAGCGCACTTGA935140.11585316962993292No Hit
GGGTGTATAGCTCAGTTGGTAGAGCAGC848640.10513680718902653No Hit
GGTCCCTTCGTCTATCGGTTAGGACGCC830170.10284858505858097No Hit
GGTTAGAGCGCCG823330.10200118714995901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)