FastQCFastQC Report
Sat 23 Sept 2023
SRR19918465_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918465_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22128222
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG460130.20793808015845106No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG356310.161020618827848No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG353400.15970555609935586No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG279770.12643130568737063No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC244060.11029354278893262No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)