FastQCFastQC Report
Sat 23 Sept 2023
SRR19918469_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918469_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21994905
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG450680.20490199889474403No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG351510.15981428426265085No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG342460.15569969499754602No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG275040.12504714159938404No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC243490.1107029105149579No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)