FastQCFastQC Report
Sat 23 Sept 2023
SRR19918481_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918481_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15848713
Total Bases792.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG287230.18123238145583176No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG221280.139620169789181No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG219320.1383834763112942No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC188240.11877305116194609No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG168770.10648814197089694No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)