FastQCFastQC Report
Sat 23 Sept 2023
SRR19918482_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918482_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15513504
Total Bases775.6 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG281790.18164174902072414No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG218730.14099329203769825No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG214810.1384664612198508No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC185160.11935408016138713No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG168860.10884710507697037No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC156470.10086051481341676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)