FastQCFastQC Report
Sat 23 Sept 2023
SRR19918484_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918484_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15703824
Total Bases785.1 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG271040.17259490427299745No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG213930.13622796587633687No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG210240.13387821972533567No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC182580.11626467540644878No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG165560.10542655088340268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)