FastQCFastQC Report
Sat 23 Sept 2023
SRR19918485_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918485_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15650400
Total Bases782.5 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG275080.17576547564279507No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG214710.13719138168992484No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG213360.13632878392884526No Hit
CGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC179600.1147574502888105No Hit
GCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG166420.10633594029545572No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)